View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1117_low_6 (Length: 329)
Name: NF1117_low_6
Description: NF1117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1117_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 97 - 320
Target Start/End: Original strand, 18093873 - 18094096
Alignment:
| Q |
97 |
gaaattggtgaatacattattccaaaagatgcacaagtgttggttaatgcatgggttattggtagagacccaaataaatgggataatgctaatgtttttg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18093873 |
gaaattggtgaatacattattccaaaagatgcacaagtgttggttaatgcatgggtgattggtagagacccaaataaatgggataatgctaatgttttta |
18093972 |
T |
|
| Q |
197 |
taccagaaaggtttttggacagtgaaattgatgttaaaggacatcattttgagcttattccatttgggtctggaagaagaatttgtcctggtttgccttt |
296 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
18093973 |
taccagaaaggtttttggacaatgaaattgatgttaaaggacatcattttgagcttattccatttgggtctggtagaagaatttgtcctggcttgccttt |
18094072 |
T |
|
| Q |
297 |
ggctattagaatgttgcctatgat |
320 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18094073 |
ggctattagaatgttgcctatgat |
18094096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 101 - 320
Target Start/End: Original strand, 18103885 - 18104104
Alignment:
| Q |
101 |
ttggtgaatacattattccaaaagatgcacaagtgttggttaatgcatgggttattggtagagacccaaataaatgggataatgctaatgtttttgtacc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18103885 |
ttggtgactacattattccaaaagatgcacaagttttgatcaatgcatgggttattggtagagacccaaataaatgggataatgctaatgtttttgtacc |
18103984 |
T |
|
| Q |
201 |
agaaaggtttttggacagtgaaattgatgttaaaggacatcattttgagcttattccatttgggtctggaagaagaatttgtcctggtttgcctttggct |
300 |
Q |
| |
|
||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18103985 |
agagaggtttttggatagtgaagttgatgttaaaggacatcattttgagcttattccatttgggtctggaagaagaatttgtcctggtttgcctttggct |
18104084 |
T |
|
| Q |
301 |
attagaatgttgcctatgat |
320 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
18104085 |
attagaatattgcctatgat |
18104104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 23244653 - 23244719
Alignment:
| Q |
222 |
aattgatgttaaaggacatcattttgagcttattccatttgggtctggaagaagaatttgtcctggt |
288 |
Q |
| |
|
||||||||||| ||||| |||||| | ||| | |||||||| |||||||||||||| ||||||||| |
|
|
| T |
23244653 |
aattgatgttaggggacaacattttcaacttctaccatttggatctggaagaagaatgtgtcctggt |
23244719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 1370354 - 1370407
Alignment:
| Q |
115 |
attccaaaagatgcacaagtgttggttaatgcatgggttattggtagagaccca |
168 |
Q |
| |
|
||||| |||||||||||| | || ||||||| ||||| |||||||||||||||| |
|
|
| T |
1370354 |
attccgaaagatgcacaaatcttcgttaatgtatgggctattggtagagaccca |
1370407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 23346803 - 23346848
Alignment:
| Q |
242 |
attttgagcttattccatttgggtctggaagaagaatttgtcctgg |
287 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
23346803 |
attttgaacttattccatttggtgctggtagaagaatttgtcctgg |
23346848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University