View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_high_2 (Length: 605)
Name: NF11180A_high_2
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 24 - 600
Target Start/End: Original strand, 6412015 - 6412611
Alignment:
| Q |
24 |
agtaagaggggtttaactgtcacgatataagttgaagtgcactaaacaatctaaataataacttgagaatcacattccacgaaaatagaaataataatat |
123 |
Q |
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| T |
6412015 |
agtaagaggggcttaagtgtcacgatatgagttgaagtgcactaaacaatctaaataataacttgagaatcacattccacgaaaatagaaataataatat |
6412114 |
T |
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| Q |
124 |
gatcatgtgtgagcttaaaatatttagaaatagaaataaaattatttgtgttttccacacattccaaaccataagaacaaagaagacaatctagttaaag |
223 |
Q |
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| T |
6412115 |
gatcatgtgtgagcttaaaatatttagaaatagaaataaaattatttgtgttttccacacattccaaaccataagaacaaagaaaacaatctagttaaag |
6412214 |
T |
|
| Q |
224 |
tagaaataccggtgtcttttaaggagatattcaaatgcaacaaatcatatagatttaagctaaataatttagcccaatgctcctacttaatagaaggatc |
323 |
Q |
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| T |
6412215 |
tagaaataccagtgtcttttaaggagatattcaaatgcaacaaatcatatagatttaagcaaaataatttagcccaatgctcctacttaatagaaggatc |
6412314 |
T |
|
| Q |
324 |
ccaaacatcttggatgtcataacaatctctaagcaaatgcataattgtttcttttttagcaccacattgacaacaagtagcatcattattcatgtgacgg |
423 |
Q |
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| T |
6412315 |
ccaaacatcttggatgtcataacaatctctaagcaaatgcataattgtttcttttttagcaccacattgacaacaagtagcatcattattcatgtgacgg |
6412414 |
T |
|
| Q |
424 |
atgttgcgctcatcaataatgaggaggcggttgtgacaaagtt--------------------ctttgaaaacctggttaactataagtcaagatgaaca |
503 |
Q |
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| T |
6412415 |
atgttgcgctcatcaataatgaggaggcagttgtgacaaagttctcaaagataagctcgggtcctttgaaaacctggttaattataagtcaagatgaaca |
6412514 |
T |
|
| Q |
504 |
gagagtatgagaaatgaaatttggagtgagatattgataagttagagaaattttcatcactagtcatgacctaacaaggatgatcctcaacaccata |
600 |
Q |
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| T |
6412515 |
gagagtatgagaaatgaaatttcgagtgagatattgataagctagagaaattttcatcactagtaatgacctaacaaggatgatcctcaacatcata |
6412611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 33231944 - 33232032
Alignment:
| Q |
53 |
agttgaagtgcactaaacaatctaaataataacttgagaatcacattccacgaaaatagaaataataatatgatcatgtgtgagcttaa |
141 |
Q |
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| T |
33231944 |
agttgaagtgcaccaaacaatctaaataaaaacatgagaatcaaattttacgagaatagaagtattattctgatcacgtgcgagcttaa |
33232032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 10738297 - 10738392
Alignment:
| Q |
48 |
atataagttgaagtgcactaaacaatctaaataataacttgagaatcacattccacgaaaatagaaataataatatgatcatgtgtgagcttaaaa |
143 |
Q |
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| T |
10738297 |
atataagttgaaatgctctaagtaatctgaataacagattgagaatcacattccacaagaagagcaataatatcatgatcatgtgcaagcttaaaa |
10738392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 17814266 - 17814309
Alignment:
| Q |
57 |
gaagtgcactaaacaatctaaataataacttgagaatcacattc |
100 |
Q |
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| T |
17814266 |
gaagtgcaccaaacaatctgaataacaacttgagaatcacattc |
17814309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 38002450 - 38002360
Alignment:
| Q |
345 |
acaatctctaagcaaatgcataattgtttcttttttagcaccacattgacaacaagtagcatcattattcatgtgacggatgttgcgctca |
435 |
Q |
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| T |
38002450 |
acaatctctaagtaaatgcataattgtttcctcctaagcaccacatcaaactcaagtaacatcatcagtcatgtgacggattctgcgctca |
38002360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 38003031 - 38002979
Alignment:
| Q |
67 |
aaacaatctaaataataacttgagaatcacattccacgaaaatagaaataata |
119 |
Q |
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| T |
38003031 |
aaacaatctaaataataacatgagaatcataatccacgataagagaagtaata |
38002979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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