View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_high_5 (Length: 445)
Name: NF11180A_high_5
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 238 - 427
Target Start/End: Original strand, 22559824 - 22560014
Alignment:
| Q |
238 |
tatataaaatagttactaatttagaagagatgatgtataaaaagtttgaaaaagaaagtcatgtacctgtgatattcatcatagtcaaagtcatatccaa |
337 |
Q |
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| T |
22559824 |
tatataaaatagttactaatttagaagtgatgatgtataaaaagtttgaaaaagaaagtcatgtacctgtgatattcatcatagtcaaagtcatatccaa |
22559923 |
T |
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| Q |
338 |
ttgcctaaattgacaacnnnnnnnnncata-gttgtcaagtttatgcaatttcaacttaattattttctatgaaaattcagtatctgatgt |
427 |
Q |
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| T |
22559924 |
ttgcctaaattgacaacaaaaaaaaacataggttgtcaagtttatgcaatttcagcttaaatattttctatgaaaactcagtatctgatgt |
22560014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 22559597 - 22559761
Alignment:
| Q |
14 |
acttataatatttatatactttaggtattaaatttgagggagtgtggaaatnnnnnnnnn--cttactagtttcctataaggtagacttagcaagaggtt |
111 |
Q |
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| T |
22559597 |
acttataatatttatatactttaggtattaaatttgagggagtgtggaaataaaaaaaaaaacttactagtttcctataaggtaggcttagcaagaggtt |
22559696 |
T |
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| Q |
112 |
ccttagaattgggtctggtttcaaattctcatatggtaatcttccatgaacaaagctgtagtaac |
176 |
Q |
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| T |
22559697 |
ccttagaattgggtctggtttcaaattctcatatggtaatcttccatgaacaaagctgtagtaac |
22559761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 7277159 - 7277107
Alignment:
| Q |
298 |
atgtacctgtgatattcatcatagtcaaagtcatatccaattgcctaaattga |
350 |
Q |
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| T |
7277159 |
atgtacctgtgatattcatcatagtcaaagtcataaccaattgcctgaattga |
7277107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 7277350 - 7277259
Alignment:
| Q |
74 |
cttactagtttcctataaggtagacttagcaagaggttccttagaattgggtctggtttcaaattctcatatggtaatcttccatgaacaaa |
165 |
Q |
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| T |
7277350 |
cttacaagtttcctgtagggaagactcagcaacagattcctcaaaatagggtctggtttcaagttctcataaggtaatcttccatgaacaaa |
7277259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 7302024 - 7302079
Alignment:
| Q |
110 |
ttccttagaattgggtctggtttcaaattctcatatggtaatcttccatgaacaaa |
165 |
Q |
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| T |
7302024 |
ttccttagaactgggtctggtttcaagttcacataaggtaatctcccatgaacaaa |
7302079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 7302185 - 7302227
Alignment:
| Q |
301 |
tacctgtgatattcatcatagtcaaagtcatatccaattgcct |
343 |
Q |
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| T |
7302185 |
tacctgtgaagttcgtcatagtcaaagtcatatccaattgcct |
7302227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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