View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_103 (Length: 270)
Name: NF11180A_low_103
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_103 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 46844712 - 46844533
Alignment:
| Q |
31 |
acaatatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatc |
130 |
Q |
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| T |
46844712 |
acaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatc |
46844613 |
T |
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| Q |
131 |
attccttcaaggaatcgttctaattctaatcggacacaaattagcaaatcatactttcctttgatgtaataagacagaca |
210 |
Q |
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| T |
46844612 |
attccttcaaggaatcggtctaattctaatcggacacaaattagcaaattatactttcctttgatgtaataagacagaca |
46844533 |
T |
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Target: scaffold0057 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 48942 - 48986
Alignment:
| Q |
37 |
tcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
81 |
Q |
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| T |
48942 |
tcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
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