View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_110 (Length: 263)
Name: NF11180A_low_110
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_110 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 42975993 - 42975768
Alignment:
| Q |
24 |
taatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttcgcattaggcctgatggcaagtcactttacttgaatcct |
123 |
Q |
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| T |
42975993 |
taatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttcgcattaggcctgatggcaagtcactttacttgaatcct |
42975894 |
T |
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| Q |
124 |
tatgcttggaacaattgtaagttgaattctcgtataatgaaattcaaccctcgttgcttcgattcatcgaactaaaaaataccggtactaatgtttatta |
223 |
Q |
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| T |
42975893 |
tatgcttggaacaattgtaagttgaattctcgtataatgaaattcaacccttgttgcttcgattcatcgaactaaaaaataccggtactaatgtttatta |
42975794 |
T |
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| Q |
224 |
ttttggatgttgcagtggcaaacata |
249 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42975793 |
ttttggatgttgcagtggcaaacata |
42975768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 42981890 - 42981769
Alignment:
| Q |
24 |
taatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttcgcattaggcctgatggcaagtcactttacttgaatcct |
123 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| | |
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| T |
42981890 |
taatggtggtcctggttgttcttctattgcttatggtgcttctgaagaaattggtccttttcgtattaggcctgatggcaaatcacttttcttgaatcgt |
42981791 |
T |
|
| Q |
124 |
tatgcttggaacaattgtaagt |
145 |
Q |
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| T |
42981790 |
tatgcttggaacaattgtaagt |
42981769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 42981717 - 42981689
Alignment:
| Q |
217 |
tttattattttggatgttgcagtggcaaa |
245 |
Q |
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| T |
42981717 |
tttattattttggatgttgcagtggcaaa |
42981689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 26633815 - 26633875
Alignment:
| Q |
25 |
aatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
85 |
Q |
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||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||| |
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| T |
26633815 |
aatggtggtcctggttgttcttctattgcttatggtgaagctgaggaaattggtccttttc |
26633875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 26641280 - 26641340
Alignment:
| Q |
25 |
aatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
85 |
Q |
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||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||| |
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| T |
26641280 |
aatggtggtcctggttgttcttctattgcttatggtgaagctgaggaaattggtccttttc |
26641340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 26626254 - 26626314
Alignment:
| Q |
25 |
aatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
85 |
Q |
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||||||||||||||||||||||| ||||||| ||||| | ||||||||||| ||||||| |
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| T |
26626254 |
aatggtggtcctggttgttcttctattgcttttggtgaagctgaagaaattggcccttttc |
26626314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 34253843 - 34253903
Alignment:
| Q |
25 |
aatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
85 |
Q |
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|||||||||||||||||||| || ||||||||||||| | || |||||||||||||||| |
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| T |
34253843 |
aatggtggtcctggttgttcatctattgcttatggtgaggctgaggaaattggtccttttc |
34253903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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