View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11180A_low_112 (Length: 261)

Name: NF11180A_low_112
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11180A_low_112
NF11180A_low_112
[»] chr5 (13 HSPs)
chr5 (29-149)||(38180888-38181008)
chr5 (29-149)||(38190123-38190243)
chr5 (29-149)||(38208112-38208232)
chr5 (29-149)||(38217348-38217468)
chr5 (29-149)||(38456248-38456368)
chr5 (29-125)||(26033228-26033324)
chr5 (29-124)||(38447447-38447542)
chr5 (206-246)||(38180768-38180808)
chr5 (206-246)||(38190323-38190363)
chr5 (206-246)||(38207992-38208032)
chr5 (206-246)||(38217548-38217588)
chr5 (206-246)||(38456128-38456168)
chr5 (206-246)||(26033448-26033488)
[»] chr4 (2 HSPs)
chr4 (53-115)||(53351367-53351429)
chr4 (207-242)||(53351852-53351887)
[»] chr1 (2 HSPs)
chr1 (29-115)||(38342739-38342825)
chr1 (29-115)||(38446932-38447018)
[»] chr6 (1 HSPs)
chr6 (40-106)||(4121643-4121709)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 38181008 - 38180888
Alignment:
Q  29 gttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaata 128  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38181008 gttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaata 38180909  T
Q  129 caaattaatgacatgatcaac 149  Q
    |||||||||||||||||||||    
T  38180908 caaattaatgacatgatcaac 38180888  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 38190123 - 38190243
Alignment:
Q  29 gttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaata 128  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38190123 gttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaata 38190222  T
Q  129 caaattaatgacatgatcaac 149  Q
    |||||||||||||||||||||    
T  38190223 caaattaatgacatgatcaac 38190243  T

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Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 38208232 - 38208112
Alignment:
Q  29 gttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaata 128  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38208232 gttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaata 38208133  T
Q  129 caaattaatgacatgatcaac 149  Q
    |||||||||||||||||||||    
T  38208132 caaattaatgacatgatcaac 38208112  T

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Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 38217348 - 38217468
Alignment:
Q  29 gttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaata 128  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38217348 gttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaata 38217447  T
Q  129 caaattaatgacatgatcaac 149  Q
    |||||||||||||||||||||    
T  38217448 caaattaatgacatgatcaac 38217468  T

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Target: chr5; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 38456368 - 38456248
Alignment:
Q  29 gttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaata 128  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38456368 gttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaata 38456269  T
Q  129 caaattaatgacatgatcaac 149  Q
    |||||||||||||||||||||    
T  38456268 caaattaatgacatgatcaac 38456248  T

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Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 26033228 - 26033324
Alignment:
Q  29 gttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactga 125  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26033228 gttgtcagggaagggtgacaagccacgcctttcaagttttctttttctcgcgttccaaaagttcttgatgtcattatcgcttcttcccggtaactga 26033324  T

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Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 38447542 - 38447447
Alignment:
Q  29 gttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactg 124  Q
    |||||| ||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  38447542 gttgtcagggaagggtgacaagccacactttttatgttttctctttctcgcattccaaaagttcttgatgtcattatcggttcttccaggcaactg 38447447  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 38180808 - 38180768
Alignment:
Q  206 tacctcatgagccagcttagaccatttgaattcaccatact 246  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38180808 tacctcatgagccagcttagaccatttgaattcaccatact 38180768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 38190323 - 38190363
Alignment:
Q  206 tacctcatgagccagcttagaccatttgaattcaccatact 246  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38190323 tacctcatgagccagcttagaccatttgaattcaccatact 38190363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 38208032 - 38207992
Alignment:
Q  206 tacctcatgagccagcttagaccatttgaattcaccatact 246  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38208032 tacctcatgagccagcttagaccatttgaattcaccatact 38207992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 38217548 - 38217588
Alignment:
Q  206 tacctcatgagccagcttagaccatttgaattcaccatact 246  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38217548 tacctcatgagccagcttagaccatttgaattcaccatact 38217588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 38456168 - 38456128
Alignment:
Q  206 tacctcatgagccagcttagaccatttgaattcaccatact 246  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38456168 tacctcatgagccagcttagaccatttgaattcaccatact 38456128  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 26033448 - 26033488
Alignment:
Q  206 tacctcatgagccagcttagaccatttgaattcaccatact 246  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  26033448 tacctcctcagccagcttagaccatttgaattcaccatact 26033488  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 53351367 - 53351429
Alignment:
Q  53 acgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc 115  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  53351367 acgcttttcaagttttctttttcttgcattccaaaaattcttgatgtcattatcgcttcttcc 53351429  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 53351852 - 53351887
Alignment:
Q  207 acctcatgagccagcttagaccatttgaattcacca 242  Q
    ||||| ||||||||||||||||||||||||||||||    
T  53351852 acctcttgagccagcttagaccatttgaattcacca 53351887  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 38342825 - 38342739
Alignment:
Q  29 gttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc 115  Q
    |||||| |||||||||||||||| | |  ||| | ||||||||||||| || ||||||||||||||||||||||||||| |||||||    
T  38342825 gttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttcc 38342739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 38447018 - 38446932
Alignment:
Q  29 gttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc 115  Q
    |||||| |||||||||||||||| | |  ||| | ||||||||||||| || ||||||||||||||||||||||||||| |||||||    
T  38447018 gttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttcc 38446932  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 4121709 - 4121643
Alignment:
Q  40 agggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc 106  Q
    ||||||| | ||||| ||||| |  |||||||||||| ||||||||||||||||||||  |||||||    
T  4121709 agggtgataggccactctttttatattttctttttcttgcattccaaaagttcttgatagcattatc 4121643  T

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