View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_123 (Length: 255)
Name: NF11180A_low_123
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_123 |
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| [»] chr8 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 12587391 - 12587149
Alignment:
| Q |
22 |
aagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagttaacatctattattaccttgttgat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12587391 |
aagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatctattattaccttgttgat |
12587292 |
T |
|
| Q |
113 |
attgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttaccgctatttcattgct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| |
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| T |
12587291 |
attgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactactattttattgct |
12587192 |
T |
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| Q |
213 |
ttaagtgtttgtgttgatgtttttatgttctttttatgattga |
255 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12587191 |
ttaagtgtctgtgttgatgtttttatgttctttttatgattga |
12587149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 94 - 255
Target Start/End: Original strand, 35036079 - 35036244
Alignment:
| Q |
94 |
ctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataa----gtgattatttgggattattcaacaatctta |
189 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| || |||||||||||||||| ||| | |
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| T |
35036079 |
ctattattactttgttgatattgaatttatgttgatagtgtaaactttattgttagggtttaataattaagtgtttttttgggattattcaacgatcatg |
35036178 |
T |
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| Q |
190 |
aactttaccgctatttcattgctttaagtgtttgtgttgatgtttttatgttctttttatgattga |
255 |
Q |
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|||||| || |||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
35036179 |
aactttgccactattttattcctttaagtgtttatgttgatgtttttatgtcctttttatgattga |
35036244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 27323308 - 27323175
Alignment:
| Q |
108 |
ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttaccgctatttca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||||| |||||| | | ||||| | |
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| T |
27323308 |
ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgacaaatgattatttaggattattcaataatcttgaactttgctgttatttta |
27323209 |
T |
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| Q |
208 |
ttgctttaagtgtttgtgttgatgtttttatgtt |
241 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
27323208 |
ttgctttaagtgtttgctttgatgtttttatgtt |
27323175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 27324458 - 27324409
Alignment:
| Q |
63 |
atttgtttattattgtaatgagagttaacatctattattaccttgttgat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27324458 |
atttgtttattattgtaatgagagttaacatctattatcaccttgttgat |
27324409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 21880389 - 21880150
Alignment:
| Q |
22 |
aagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagttaacatctattattaccttgttgat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21880389 |
aagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatctattattaccttgttgat |
21880290 |
T |
|
| Q |
113 |
attgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttaccgctatttcattgct |
212 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
21880289 |
attgaatttatgttgattgtgtaaaatttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttactactattttattgct |
21880190 |
T |
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| Q |
213 |
ttaagtgtttgtgttgatgtttttatgttctttttatgat |
252 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
21880189 |
ttaagtgtttgtgttgatgtttttatgttatttttatgat |
21880150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 15494216 - 15494177
Alignment:
| Q |
213 |
ttaagtgtttgtgttgatgtttttatgttctttttatgat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
15494216 |
ttaagtgtttgtgttgatgtttttatgttctttttatgat |
15494177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 49602941 - 49602699
Alignment:
| Q |
22 |
aagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagttaacatctattattaccttgttgat |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49602941 |
aagaggtacactctcttccttatttatatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatctattattaccttgttgat |
49602842 |
T |
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| Q |
113 |
attgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttaccgctatttcattgct |
212 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |
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| T |
49602841 |
attgaatttatgttgattgtacaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactctactactattttattgct |
49602742 |
T |
|
| Q |
213 |
ttaagtgtttgtgttgatgtttttatgttctttttatgattga |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49602741 |
ttaagtgtttgtgttgatgtttttatgttctttttatgattga |
49602699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 22970236 - 22970475
Alignment:
| Q |
22 |
aagaggtacactctcttccttatttttatgattttaaacttatttg---------tttattattgtaatgagagttaacatctattattaccttgttgat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22970236 |
aagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatctattattaccttgttgat |
22970335 |
T |
|
| Q |
113 |
attgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttaccgctatttcattgct |
212 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| |
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| T |
22970336 |
attgaatttatgttgattgtaaaaaatttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactactattttattgct |
22970435 |
T |
|
| Q |
213 |
ttaagtgtttgtgttgatgtttttatgttctttttatgat |
252 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |
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| T |
22970436 |
ttaagtgtatgtgttgatgtttttatgttatttttatgat |
22970475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 64 - 255
Target Start/End: Original strand, 6901002 - 6901193
Alignment:
| Q |
64 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6901002 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga |
6901101 |
T |
|
| Q |
164 |
ttatttgggattattcaacaatcttaaactttaccgctatttcattgctttaagtgtttgtgttgatgtttttatgttctttttatgattga |
255 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6901102 |
ttatttaggattattcaacaatattaaactttactactattttattgctttaagtgtttgtgttgatgtttttatgttctttttatgattga |
6901193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 6900763 - 6900803
Alignment:
| Q |
22 |
aagaggtacactctcttccttatttttatgattttaaactt |
62 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6900763 |
aagaggtgcactctcttccttatttttatgattttaaactt |
6900803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 61 - 255
Target Start/End: Complemental strand, 22329848 - 22329655
Alignment:
| Q |
61 |
ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag |
160 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22329848 |
ttatttgtttgttattgtaatgagagttaacatctattattaagttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag |
22329749 |
T |
|
| Q |
161 |
tgattatttgggattattcaacaatcttaaactttaccgctatttcattgctttaagtgtttgtgttgatgtttttatgttctttttatgattga |
255 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||| | ||||||| ||| |||||||||||||||||| ||||||| |||| |||||||||||| |
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|
| T |
22329748 |
tgattatttgggattatt-tacaatcttgaattttgctgctattttattactttaagtgtttgtgttggtgtttttttgtttcttttatgattga |
22329655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 255
Target Start/End: Complemental strand, 35360511 - 35360319
Alignment:
| Q |
61 |
ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag |
160 |
Q |
| |
|
||||||||| |||| |||| | ||||||| | ||||||||||||| |||||| || || ||||||| ||| ||||||||||||||||||| || || |
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|
| T |
35360511 |
ttatttgttaattacagtaacgtgagttaatttatattattaccttgccgatattaaacttttgttgatagtgataactttattgttagggtttaat-ag |
35360413 |
T |
|
| Q |
161 |
tgattatttgggattattcaacaatcttaaactttaccgctatttcattgctttaagtgtttgtgttgatgtttttatgttctttttatgattga |
255 |
Q |
| |
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|| |||||||| ||||||||||||| ||||||||| | | ||||| | |||| | ||||| |||||||| ||||||||||||||||||||||| |
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| T |
35360412 |
tgtttatttggaattattcaacaattttaaactttgctgttattttttcgcttccaatgtttatgttgatg-ttttatgttctttttatgattga |
35360319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 3497398 - 3497318
Alignment:
| Q |
175 |
tattcaacaatcttaaactttaccgctatttcattgctttaagtgtttgtgttgatgtttttatgttctttttatgattga |
255 |
Q |
| |
|
|||||||||||||| |||||||| |||||| |||||||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
3497398 |
tattcaacaatcttgaactttacgactattttattgctttaagtgtttatgttgatatttttatgtcctttttatgattga |
3497318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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