View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11180A_low_127 (Length: 254)

Name: NF11180A_low_127
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11180A_low_127
NF11180A_low_127
[»] chr4 (3 HSPs)
chr4 (17-226)||(40115296-40115505)
chr4 (100-189)||(9007211-9007300)
chr4 (86-158)||(42360930-42361002)
[»] chr5 (1 HSPs)
chr5 (86-158)||(3017198-3017270)
[»] chr2 (1 HSPs)
chr2 (124-159)||(9038424-9038459)
[»] chr6 (1 HSPs)
chr6 (81-159)||(3703285-3703363)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 40115296 - 40115505
Alignment:
Q  17 aatatgatgccaaggtggattagtggcgagtgaagttatgaagctnnnnnnnnnnnnctttggaatgtggtagagaccatccttatgcaatccttttaga 116  Q
    ||||||||||||||||||| |||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||    
T  40115296 aatatgatgccaaggtggagtagtggcgagtgaagttatgaagctggtggtgggtggctttggaatgtggtagagaccatccttatgcaatccttttaga 40115395  T
Q  117 agaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttttgcataaatgtgagacagacaataact 216  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40115396 agaggctcccttgtcttcaaatccttcaccaaaaaataatcagaaaaaaattcaatggatatagggttagttttgcataaatgtgagacagacaataact 40115495  T
Q  217 tgcaagtgat 226  Q
    ||||||||||    
T  40115496 tgcaagtgat 40115505  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 9007211 - 9007300
Alignment:
Q  100 tatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttt 189  Q
    |||||| |||||| || ||||||||| |||||||||||||||||||||||||| ||||||       ||||||||| ||| |||||||||    
T  9007211 tatgcagtcctttgaggagaggctcctttgtcttcaaatccttcaccaaaaaacaatcagaaaaaaattcaatggaaatagggttagttt 9007300  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 42360930 - 42361002
Alignment:
Q  86 gtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca 158  Q
    |||||| ||||||||||||| |||||||| ||||||  ||||||||||||| ||||| |||||  ||||||||    
T  42360930 gtagagcccatccttatgcattccttttataagaggagcccttgtcttcaagtcctttaccaagtaataatca 42361002  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 3017270 - 3017198
Alignment:
Q  86 gtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca 158  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||| ||||| |||||  ||||||||    
T  3017270 gtagagcccatccttatgcaatccttttagaagaggagcccttgtcttcaagtcctttaccaagtaataatca 3017198  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 9038424 - 9038459
Alignment:
Q  124 cccttgtcttcaaatccttcaccaaaaaataatcag 159  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9038424 cccttgtcttcaaatccttcaccaaaaaaaaatcag 9038459  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 3703285 - 3703363
Alignment:
Q  81 atgtggtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcag 159  Q
    ||||||||||| ||||  ||||||  |||| ||||||  ||| ||||||||||||||||||| | ||||||| ||||||    
T  3703285 atgtggtagagtccattgttatgccgtcctcttagaatgggcacccttgtcttcaaatccttaatcaaaaaacaatcag 3703363  T

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