View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_132 (Length: 251)
Name: NF11180A_low_132
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_132 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 166
Target Start/End: Complemental strand, 40758474 - 40758314
Alignment:
| Q |
6 |
agttactactgcggtcttgcacaaaatttgactggattttccattgtaatattttaatgttaaatctattgaaaatagattccttgtgtatacattattc |
105 |
Q |
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| T |
40758474 |
agttactactgcggtcttgcacaaaatttgactggattttccattgtaatattttaatgttaaatctattgaaaatagattccttgtgtatacattattc |
40758375 |
T |
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| Q |
106 |
tttcggtataaataacatcagcataacagttctttcaacatcaataatatcacaatgctta |
166 |
Q |
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| T |
40758374 |
tttcagtataaataacatcagcataacaattctttcaacatcaataatatcacaatgctta |
40758314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 40758262 - 40758229
Alignment:
| Q |
218 |
ggcagtggtttgatcatttatctcatgtctgatg |
251 |
Q |
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| T |
40758262 |
ggcagtggtttgatcattcatctcatgtctgatg |
40758229 |
T |
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