View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_134 (Length: 250)
Name: NF11180A_low_134
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_134 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 7919972 - 7919772
Alignment:
| Q |
19 |
aatcagatagtctatataacttaatattaatttttctttacaaaatataataatcattattgaattaaaaaattgcaccctttgaatcaaggtcttggat |
118 |
Q |
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| T |
7919972 |
aatcagatagtctatataacttaatactaatttttctttacaaaatataataatcattattgaattaagaaattgcaccctttgaatcaaggtcttggat |
7919873 |
T |
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| Q |
119 |
ccgccagaatacttggttgtggaaagttattatgtaactttcaaaattgtaacatttttacaaagcaactaaaaaagagaaatgtgacttgcttgatgat |
218 |
Q |
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| T |
7919872 |
ccgccagaattcttggttgtggaaagttattatgtaactttcaaaattgtagcatttttacaaagcaactaaaaaagagaaatgtgacttgcttgatgat |
7919773 |
T |
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| Q |
219 |
g |
219 |
Q |
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| T |
7919772 |
g |
7919772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 7916618 - 7916543
Alignment:
| Q |
140 |
gaaagttattatgtaactttcaaaattgtaacatttttacaaagcaactaaaaaagagaaatgtgacttgcttgat |
215 |
Q |
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| T |
7916618 |
gaaagtcattatgttacttttaaaattatatcattgttacaaagcaactaaaaaagagaaatgtgatttgtttgat |
7916543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 7916675 - 7916642
Alignment:
| Q |
132 |
tggttgtggaaagttattatgtaactttcaaaat |
165 |
Q |
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| T |
7916675 |
tggttgtggaaagttattatgttactttcaaaat |
7916642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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