View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_137 (Length: 250)
Name: NF11180A_low_137
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_137 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 53985024 - 53984798
Alignment:
| Q |
19 |
gaagttgatgctagacgttcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaattta |
118 |
Q |
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| T |
53985024 |
gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaattta |
53984925 |
T |
|
| Q |
119 |
atttggtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaa |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984924 |
atttggtaaatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaa |
53984825 |
T |
|
| Q |
219 |
atattccgacgtgcatttcatctcagt |
245 |
Q |
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||||||||||||||||||||||||||| |
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| T |
53984824 |
atattccgacgtgcatttcatctcagt |
53984798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 53971312 - 53971094
Alignment:
| Q |
25 |
gatgctagacgttcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaaga-tatgataaggataatttgacgatttaatttaatttg |
123 |
Q |
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|||||||||||| || |||||||||| ||||||||||||||||||||||||||||| | | | |||||| |||||||||||| |||||||||||||||| |
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| T |
53971312 |
gatgctagacgtgctctaacatagtccgaaacttcaacatcttaccattcatcaggtatgatactatgattaggataatttgatgatttaatttaatttg |
53971213 |
T |
|
| Q |
124 |
gtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaatatt |
223 |
Q |
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| T |
53971212 |
gtaaatatacctct--acatgtcttactaccccctccgtcttattgtaggagatggaggatggaatttatgaggacaattggcaggacccacaaaatgtt |
53971115 |
T |
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| Q |
224 |
ccgacgtgcatttcatctcag |
244 |
Q |
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||||| || |||||||||||| |
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| T |
53971114 |
ccgacatgtatttcatctcag |
53971094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 19935380 - 19935421
Alignment:
| Q |
42 |
aacatagtcccaaacttcaacatcttaccattcatcaggttt |
83 |
Q |
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| T |
19935380 |
aacattgtcccaaacttcaaaatcttaccattcatcaggttt |
19935421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 19966519 - 19966560
Alignment:
| Q |
42 |
aacatagtcccaaacttcaacatcttaccattcatcaggttt |
83 |
Q |
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| T |
19966519 |
aacattgtcccaaacttcaaaatcttaccattcatcaggttt |
19966560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 31014484 - 31014529
Alignment:
| Q |
38 |
cttcaacatagtcccaaacttcaacatcttaccattcatcaggttt |
83 |
Q |
| |
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|||||||| |||||||| ||||||||||||| ||||||| |||||| |
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| T |
31014484 |
cttcaacacagtcccaagcttcaacatcttatcattcataaggttt |
31014529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 34036300 - 34036358
Alignment:
| Q |
25 |
gatgctagacgttcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt |
83 |
Q |
| |
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||||||||| | |||||||| |||||||| ||||||||||||| ||||||| |||||| |
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| T |
34036300 |
gatgctagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt |
34036358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 6688112 - 6688157
Alignment:
| Q |
38 |
cttcaacatagtcccaaacttcaacatcttaccattcatcaggttt |
83 |
Q |
| |
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|||||||| |||||||| ||||||||||||| ||||||| |||||| |
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| T |
6688112 |
cttcaacacagtcccaagcttcaacatcttatcattcatgaggttt |
6688157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 16164055 - 16163998
Alignment:
| Q |
25 |
gatgctagacgttcttcaacatagtcccaaacttcaacatcttaccattcatcaggtt |
82 |
Q |
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||||||||| || |||||||| || ||||| ||| |||||||| |||||||||||||| |
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| T |
16164055 |
gatgctagaagtgcttcaacagaggcccaagcttgaacatcttgccattcatcaggtt |
16163998 |
T |
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