View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_14 (Length: 422)
Name: NF11180A_low_14
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 45759396 - 45759808
Alignment:
| Q |
1 |
atcttgtcctaaaagtatttgaaaccatttgcttataatatgttttatacattggagcaaagactcaaaaattccacggaaaacatccttacagccaaac |
100 |
Q |
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| T |
45759396 |
atcttgtcctaaaagtatatgaaaccatttgcttataatatgttttatacattggagcaaagactcaaaaattccacggaaaacatccttacagccaaac |
45759495 |
T |
|
| Q |
101 |
tactagcttctaactaccagaagnnnnnnnnnnttatcaacaagaattttcttgctgaaaaactatttataaggaaaaaacttaaacaatacgtgttgga |
200 |
Q |
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| T |
45759496 |
tactagcttctaactaccagaagaagaaaaaa-ttatcaacaagaattttcttgctgaaaaactatttataaggaaaaaacttaaacaatacgtgttgga |
45759594 |
T |
|
| Q |
201 |
ttacatttttaaataaagttatttgaccaatattttttacaacagctacattttgtattatttcctcctacttaaaatgagtgccgtttaaggttattac |
300 |
Q |
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| T |
45759595 |
ttacatttttaaataaagttatttgaccaatattttttacaacagctccattttgaattatttcctcctacttaaaatgagtgccgtttaaggttattac |
45759694 |
T |
|
| Q |
301 |
atttaaattaatgaatacaataacatagtcaagagacatataagt-aaaaaatgacattcattttaattattattttttaaaacgatgctcattataaat |
399 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45759695 |
atttaaattaatgaatacaataacatagtcaaaagacatataagtaaaaaaatgacattcattttaattattattttttaaaacgatactcattataaat |
45759794 |
T |
|
| Q |
400 |
cgttagagtattat |
413 |
Q |
| |
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| T |
45759795 |
cgttagagtattat |
45759808 |
T |
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