View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_145 (Length: 249)
Name: NF11180A_low_145
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_145 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 38643217 - 38643444
Alignment:
| Q |
1 |
aacagaaacacaaggcttcttaaatataaatcacatgttaccatagctggcagcatatgaatcctacattctcatccactgagcctgtcataaaagctag |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38643217 |
aacaaaaacacaaggcttcttaaatataaatcacatgttaccatagctggcagcatatgaatcctacattctcatccactgagcctgtcataaaagctag |
38643316 |
T |
|
| Q |
101 |
tacttagttgttagtttgcctctgctagttgccattattcacatttcactcaactcaccccaagaataatggaacatagaagaaactcatcatggtttct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38643317 |
tacttagttgttagtttgcctctgctagttgccattattcacatttcactcaactcaccccaagaataatggaacatagaagaaactcatcatggtttct |
38643416 |
T |
|
| Q |
201 |
tctattctcaactctttcttgtcttttt |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
38643417 |
tctattctcaactctttcttgtcttttt |
38643444 |
T |
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