View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11180A_low_148 (Length: 248)

Name: NF11180A_low_148
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11180A_low_148
NF11180A_low_148
[»] chr5 (24 HSPs)
chr5 (1-122)||(25869333-25869454)
chr5 (9-119)||(28622520-28622630)
chr5 (1-110)||(32236892-32236999)
chr5 (56-122)||(33892308-33892374)
chr5 (56-122)||(34910157-34910223)
chr5 (54-122)||(2674553-2674621)
chr5 (9-119)||(37797471-37797581)
chr5 (56-120)||(31914047-31914111)
chr5 (56-120)||(36180176-36180240)
chr5 (9-120)||(36195680-36195791)
chr5 (14-63)||(19226272-19226321)
chr5 (1-97)||(16497276-16497372)
chr5 (69-120)||(3032782-3032833)
chr5 (56-122)||(21238249-21238314)
chr5 (1-46)||(33892266-33892311)
chr5 (75-119)||(29716280-29716324)
chr5 (56-120)||(35701902-35701966)
chr5 (2-53)||(2674514-2674565)
chr5 (56-119)||(5650175-5650238)
chr5 (56-119)||(7124274-7124337)
chr5 (1-46)||(21238207-21238252)
chr5 (80-120)||(4840888-4840928)
chr5 (74-114)||(16548591-16548631)
chr5 (2-46)||(31914108-31914152)
[»] chr7 (19 HSPs)
chr7 (1-122)||(35314073-35314194)
chr7 (1-122)||(21024610-21024731)
chr7 (2-122)||(38911018-38911137)
chr7 (13-122)||(34657171-34657279)
chr7 (1-120)||(6269106-6269224)
chr7 (1-122)||(37391893-37392013)
chr7 (9-119)||(4639231-4639341)
chr7 (56-122)||(14731757-14731823)
chr7 (56-120)||(1253888-1253952)
chr7 (9-119)||(37915410-37915520)
chr7 (56-111)||(5771542-5771597)
chr7 (74-119)||(23017663-23017708)
chr7 (56-120)||(31175191-31175255)
chr7 (74-114)||(42044179-42044219)
chr7 (56-119)||(42611197-42611260)
chr7 (83-119)||(16710201-16710237)
chr7 (83-119)||(17684437-17684473)
chr7 (56-119)||(21486816-21486879)
chr7 (56-114)||(33496776-33496834)
[»] chr1 (37 HSPs)
chr1 (1-122)||(33886296-33886417)
chr1 (1-122)||(33957835-33957956)
chr1 (9-119)||(49452371-49452481)
chr1 (1-114)||(5208617-5208730)
chr1 (1-122)||(30176908-30177028)
chr1 (1-96)||(7799102-7799197)
chr1 (9-119)||(4006006-4006116)
chr1 (9-119)||(41354079-41354189)
chr1 (56-123)||(34019647-34019714)
chr1 (1-120)||(50037957-50038075)
chr1 (1-119)||(3593916-3594034)
chr1 (9-119)||(9174529-9174639)
chr1 (9-119)||(18246894-18247004)
chr1 (56-114)||(34751037-34751095)
chr1 (56-114)||(43855084-43855142)
chr1 (9-119)||(51107841-51107951)
chr1 (56-108)||(42637521-42637573)
chr1 (68-119)||(28403319-28403370)
chr1 (74-121)||(42303771-42303818)
chr1 (56-119)||(47370928-47370991)
chr1 (56-114)||(49236365-49236423)
chr1 (55-119)||(1242682-1242746)
chr1 (56-119)||(8148001-8148064)
chr1 (56-119)||(11578500-11578563)
chr1 (9-119)||(32759390-32759501)
chr1 (68-122)||(1108969-1109022)
chr1 (66-120)||(40431773-40431827)
chr1 (1-46)||(1109018-1109063)
chr1 (56-113)||(15928277-15928334)
chr1 (82-122)||(8122656-8122696)
chr1 (56-106)||(2292626-2292676)
chr1 (9-63)||(8148044-8148098)
chr1 (56-114)||(49971049-49971107)
chr1 (74-111)||(19863578-19863615)
chr1 (1-54)||(42637479-42637532)
chr1 (80-113)||(48965899-48965932)
chr1 (2-35)||(52182770-52182803)
[»] chr6 (13 HSPs)
chr6 (1-122)||(31995655-31995776)
chr6 (9-119)||(6789019-6789129)
chr6 (9-119)||(10110670-10110780)
chr6 (9-119)||(1462740-1462850)
chr6 (56-119)||(24202783-24202846)
chr6 (56-114)||(16439376-16439434)
chr6 (74-119)||(31534483-31534528)
chr6 (55-119)||(31975111-31975175)
chr6 (1-63)||(7834997-7835059)
chr6 (74-112)||(32567678-32567716)
chr6 (74-119)||(2607610-2607655)
chr6 (85-122)||(8779039-8779076)
chr6 (1-119)||(3000915-3001033)
[»] chr4 (37 HSPs)
chr4 (1-122)||(54561777-54561897)
chr4 (1-114)||(29965839-29965952)
chr4 (56-122)||(41469682-41469748)
chr4 (56-122)||(8562550-8562616)
chr4 (1-122)||(25014008-25014116)
chr4 (1-134)||(6486761-6486891)
chr4 (9-119)||(8084829-8084939)
chr4 (1-120)||(21305720-21305840)
chr4 (56-119)||(33141003-33141066)
chr4 (56-119)||(50517773-50517836)
chr4 (56-122)||(9973400-9973465)
chr4 (56-114)||(17503272-17503330)
chr4 (56-114)||(23170161-23170219)
chr4 (1-63)||(40163339-40163401)
chr4 (1-63)||(40487067-40487129)
chr4 (1-122)||(56423420-56423538)
chr4 (2-102)||(872189-872289)
chr4 (9-113)||(4511370-4511474)
chr4 (74-114)||(12754993-12755033)
chr4 (56-123)||(26449175-26449241)
chr4 (56-119)||(26490635-26490698)
chr4 (74-117)||(26973003-26973046)
chr4 (56-119)||(29469801-29469864)
chr4 (56-119)||(29509420-29509483)
chr4 (56-119)||(40487109-40487172)
chr4 (56-110)||(40163306-40163359)
chr4 (9-119)||(42936934-42937044)
chr4 (84-122)||(51967709-51967747)
chr4 (1-46)||(41469640-41469685)
chr4 (56-108)||(22480318-22480370)
chr4 (74-114)||(55166036-55166076)
chr4 (1-63)||(26449221-26449283)
chr4 (54-119)||(23670961-23671026)
chr4 (74-119)||(32890556-32890601)
chr4 (66-111)||(37400528-37400573)
chr4 (74-114)||(24454249-24454289)
chr4 (81-109)||(25842435-25842463)
[»] chr3 (26 HSPs)
chr3 (1-122)||(9817996-9818116)
chr3 (1-122)||(47466822-47466942)
chr3 (1-120)||(30237902-30238021)
chr3 (1-122)||(27261916-27262037)
chr3 (9-119)||(49296752-49296862)
chr3 (9-119)||(7436869-7436979)
chr3 (9-119)||(8599594-8599704)
chr3 (9-119)||(49459047-49459157)
chr3 (1-134)||(53644755-53644876)
chr3 (32-107)||(29650839-29650914)
chr3 (56-120)||(27163027-27163091)
chr3 (9-119)||(33693948-33694058)
chr3 (56-106)||(45731311-45731361)
chr3 (9-63)||(45731341-45731395)
chr3 (56-122)||(49294273-49294338)
chr3 (11-111)||(32766605-32766705)
chr3 (55-119)||(53836596-53836660)
chr3 (80-119)||(4962092-4962131)
chr3 (56-119)||(24063976-24064038)
chr3 (56-119)||(43173573-43173636)
chr3 (56-122)||(40064818-40064883)
chr3 (68-120)||(31164168-31164220)
chr3 (55-102)||(27988294-27988341)
chr3 (56-122)||(37833365-37833430)
chr3 (1-119)||(22488419-22488529)
chr3 (10-63)||(37833410-37833463)
[»] chr2 (19 HSPs)
chr2 (1-120)||(13908628-13908747)
chr2 (9-119)||(18899256-18899366)
chr2 (32-120)||(28546359-28546446)
chr2 (13-119)||(18726933-18727039)
chr2 (56-122)||(45160655-45160720)
chr2 (54-114)||(41979390-41979450)
chr2 (66-121)||(2104309-2104364)
chr2 (56-119)||(9731630-9731693)
chr2 (74-113)||(30851383-30851422)
chr2 (60-121)||(13327682-13327743)
chr2 (2-63)||(38411938-38411999)
chr2 (80-119)||(38295092-38295131)
chr2 (56-110)||(38411979-38412032)
chr2 (74-119)||(31846543-31846588)
chr2 (1-62)||(33263482-33263543)
chr2 (55-120)||(37790363-37790428)
chr2 (56-119)||(42242478-42242541)
chr2 (74-119)||(40830311-40830356)
chr2 (69-108)||(34353412-34353452)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-119)||(16149-16259)
[»] chr8 (15 HSPs)
chr8 (1-119)||(6387204-6387322)
chr8 (9-119)||(19484851-19484961)
chr8 (56-120)||(4870524-4870588)
chr8 (56-119)||(26619985-26620048)
chr8 (56-113)||(8029212-8029269)
chr8 (9-109)||(27974277-27974377)
chr8 (9-109)||(28031546-28031646)
chr8 (68-120)||(33177259-33177311)
chr8 (57-119)||(3007178-3007241)
chr8 (56-119)||(42423885-42423948)
chr8 (80-114)||(18985015-18985049)
chr8 (74-119)||(24082867-24082912)
chr8 (56-108)||(12521765-12521817)
chr8 (11-119)||(27869087-27869195)
chr8 (74-114)||(35880048-35880088)
[»] scaffold0118 (1 HSPs)
scaffold0118 (13-108)||(38484-38579)
[»] scaffold0246 (4 HSPs)
scaffold0246 (1-63)||(25006-25068)
scaffold0246 (56-119)||(25048-25111)
scaffold0246 (1-52)||(1970-2021)
scaffold0246 (80-122)||(1926-1968)
[»] scaffold0024 (1 HSPs)
scaffold0024 (55-120)||(136201-136266)
[»] scaffold0116 (1 HSPs)
scaffold0116 (74-114)||(4965-5005)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 25869454 - 25869333
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||| ||||||  ||||||||| ||||||||||||| |||||||||||||||||||||    
T  25869454 gttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgactcgtaaattcgtacgagtttacctaaaattaaaat 25869355  T
Q  101 tatataaaatttatcatatata 122  Q
    |||||||||||||| |||||||    
T  25869354 tatataaaatttattatatata 25869333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 28622520 - 28622630
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||||||| ||||| |||| |  ||||||||| ||||||| ||||| |||||||||||||||| ||||| |||| |    
T  28622520 actcgagagtttacctcaactcgttttagctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaattttataca 28622619  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  28622620 atttattatat 28622630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 32236892 - 32236999
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    |||||||  |||||||||||| || ||||||||||| ||||||||| ||||||  ||||||||| ||||||| ||||| |||||||||||||||||||      
T  32236892 gttttacacctcgagagtttacctcaactcgttttaactatgtaaactcgaatcgtaaactcgactcgtaaactcgtacgagtttacctaaaattaaa-- 32236989  T
Q  101 tatataaaat 110  Q
    ||||||||||    
T  32236990 tatataaaat 32236999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 33892308 - 33892374
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  33892308 taaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatatata 33892374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 34910223 - 34910157
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  34910223 taaactcgaatcgtaaactcgtacgagtttatctaaaattaaaattatataaaatttattatatata 34910157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 2674553 - 2674621
Alignment:
Q  54 tataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    |||||| |||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  2674553 tataaattcgaatcgtaaactcgtacgagtttatctaaaattaaaattatataaaatttattatatata 2674621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 37797471 - 37797581
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| |||  |||| |||| |  ||||||||| || |||| ||||| |||||||||||||||| ||||| |||| |    
T  37797471 actcgagagtttacctcaactcgttttacctagataaactcgactcgtaaactcgaatcataaactcgtacgagtttacctaaaattgaaattttataca 37797570  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  37797571 atttattatat 37797581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 31914111 - 31914047
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    ||||||||| || |||| ||||| |||| |||||||||||||||||||||||||||||| |||||    
T  31914111 taaactcgaatcataaactcgtacgagtatacctaaaattaaaattatataaaatttattatata 31914047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 36180240 - 36180176
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    ||||||| | ||||||| | |||||| |||| |||||||||||||||||||||||||||||||||    
T  36180240 taaactcaactcgtaaacttgtatgattttatctaaaattaaaattatataaaatttatcatata 36180176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 36195680 - 36195791
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    |||||| |||||| || |||| ||||||  ||| |||| ||||||  ||||||||| | |||||||| ||  |||||  |||||||||||||||||||||    
T  36195680 actcgaaagtttacctcaacttgttttacgtatataaactcgaatcgtaaactcgacttgtaaattcatacaagtttgtctaaaattaaaattatataaa 36195779  T
Q  109 atttatcatata 120  Q
    |||||| |||||    
T  36195780 atttattatata 36195791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 19226321 - 19226272
Alignment:
Q  14 agagtttatctaaactcgttttagctatgtaaattcgaattataaactcg 63  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  19226321 agagtttacctcaactcgttttagctatgtaaattcgaattgtaaactcg 19226272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 16497276 - 16497372
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaa 97  Q
    ||||||| |||| ||||||| ||| ||||||||||| ||| ||||| |  |||  ||||||||| || |||| ||||| ||||||||||||||||||    
T  16497276 gttttacaactcaagagtttgtctcaactcgttttatctaagtaaactaaaatcgtaaactcgactcataaactcgtacgagtttacctaaaattaa 16497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 3032833 - 3032782
Alignment:
Q  69 taaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  3032833 taaactcgtacgagtttacctaaaatcaaaattatataaaatttattatata 3032782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 21238249 - 21238314
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    |||||| || ||||||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||    
T  21238249 taaacttgaatcgtaaaatcgtacgagtttacctaaaattaaaattgtat-aaatttattatatata 21238314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33892266 - 33892311
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaa 46  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||    
T  33892266 gttttacaactcgagagtttacctcaactcgttttagctatgtaaa 33892311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 29716280 - 29716324
Alignment:
Q  75 cgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||    
T  29716280 cgtacgagtttacctaaaattaaaattgtataaaatttattatat 29716324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 35701966 - 35701902
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    ||||||| | ||||||| | ||| ||||||||||||||||||||||||| |||| |||| |||||    
T  35701966 taaactcaactcgtaaacttgtacgagtttacctaaaattaaaattataaaaaaattattatata 35701902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 2674514 - 2674565
Alignment:
Q  2 ttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaat 53  Q
    |||||| | ||||||||||| || |||||||||||||||| |||||||||||    
T  2674514 ttttacaattcgagagtttacctcaactcgttttagctatataaattcgaat 2674565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 5650175 - 5650238
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| || |||| ||||| |||||||||||||||| ||||| |||| ||||||| ||||    
T  5650175 taaactcgactcataaactcgtacgagtttacctaaaattgaaattgtatacaatttattatat 5650238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 7124274 - 7124337
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| ||||||| ||| | |||||||||||||||| ||||| |||| ||||||| ||||    
T  7124274 taaactcgaatcgtaaactcgcacgagtttacctaaaattgaaattttatacaatttattatat 7124337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21238207 - 21238252
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaa 46  Q
    ||||||| ||||||||||||| || ||||||||||| |||||||||    
T  21238207 gttttacaactcgagagtttacctcaactcgttttaactatgtaaa 21238252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 4840888 - 4840928
Alignment:
Q  80 gagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    ||||||| ||||||||||||||||||| ||||||| |||||    
T  4840888 gagtttaactaaaattaaaattatatacaatttattatata 4840928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 16548591 - 16548631
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  16548591 tcgtacgaatttacctaaaattaaaattaaataaaatttat 16548631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 31914152 - 31914108
Alignment:
Q  2 ttttacgactcgagagtttatctaaactcgttttagctatgtaaa 46  Q
    |||||| ||||||||||||| || ||||||||||| |||||||||    
T  31914152 ttttacaactcgagagtttacctcaactcgttttacctatgtaaa 31914108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 35314194 - 35314073
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||| ||||||||| || ||||||||||||||||||||| ||||||  ||||||||| ||||||| |||||||||||||||||||||||||||    
T  35314194 gttttacaacttgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgactcgtaaactcgtatgagtttacctaaaattaaaat 35314095  T
Q  101 tatataaaatttatcatatata 122  Q
    |||||||||||||| |||||||    
T  35314094 tatataaaatttattatatata 35314073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 21024731 - 21024610
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || |||| |||||||||||||||| ||||||  ||||||||| ||||||| ||||| |||||||||||||||||||||    
T  21024731 gttttacaactcgagagtttacctcaactagttttagctatgtaaactcgaatcgtaaactcgactcgtaaactcgtacgagtttacctaaaattaaaat 21024632  T
Q  101 tatataaaatttatcatatata 122  Q
    |||||||||||||| |||||||    
T  21024631 tatataaaatttattatatata 21024610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 38911137 - 38911018
Alignment:
Q  2 ttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaatt 101  Q
    |||||| ||||||||||||| |||||||| |||||| |||||||| |||||| |||||||||| ||||||| ||||| |||||||||||||||| |||||    
T  38911137 ttttacaactcgagagtttacctaaactcattttagttatgtaaactcgaatcataaactcgactcgtaaactcgtacgagtttacctaaaatt-aaatt 38911039  T
Q  102 atataaaatttatcatatata 122  Q
    ||||||||||||| |||||||    
T  38911038 atataaaatttattatatata 38911018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 34657279 - 34657171
Alignment:
Q  13 gagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaattt 112  Q
    |||||||||||| ||||| ||||||||||||||| ||||||  ||||||||| ||||||||||||| || |||| |||||||| ||||||||||||||||    
T  34657279 gagagtttatctcaactcattttagctatgtaaactcgaatcgtaaactcgactcgtaaattcgtacgaatttatctaaaatt-aaattatataaaattt 34657181  T
Q  113 atcatatata 122  Q
    || |||||||    
T  34657180 attatatata 34657171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 6269224 - 6269106
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| |||||||||||| ||| |||| ||||||  |||||||| || ||| ||||||| || | ||||| ||||| |||||||||||||||||||||    
T  6269224 gttttacaactcgagagtttttctcaacttgttttat-tatgtaaactcaaatcataaacttgacttgtaaactcgtacgagtttacctaaaattaaaat 6269126  T
Q  101 tatataaaatttatcatata 120  Q
    |||||||||||||| |||||    
T  6269125 tatataaaatttattatata 6269106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 37391893 - 37392013
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || ||||| |||||  |||||||| ||||||  ||||||||| |  |||| ||||| |||||||||||||||| ||||    
T  37391893 gttttacaactcgagagtttacctcaactcattttatttatgtaaactcgaatcgtaaactcgacttataaactcgtacgagtttacctaaaatt-aaat 37391991  T
Q  101 tatataaaatttatcatatata 122  Q
    |||||||||||||| |||||||    
T  37391992 tatataaaatttattatatata 37392013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 4639231 - 4639341
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||||| |||||||||||||||| ||||| |||| |    
T  4639231 actcgagagtttacctcaactcgttttaactaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaattttataca 4639330  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  4639331 atttattatat 4639341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 14731757 - 14731823
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  14731757 taaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatatata 14731823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 1253888 - 1253952
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  1253888 taaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatata 1253952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 37915410 - 37915520
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  |||||| || ||||||| ||||| || ||||||||||||| ||||| |||| |    
T  37915410 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaacttgaatcgtaaactcgtacgaatttacctaaaattgaaattttataca 37915509  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  37915510 atttattatat 37915520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 5771542 - 5771597
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatt 111  Q
    ||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||||    
T  5771542 taaactcgactcgaaaattcgtacgagtttacctaaaattgaaattatataaaatt 5771597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 23017708 - 23017663
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||    
T  23017708 tcgtataagtttacctaaaattaaaattatataaaatttattatat 23017663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 31175255 - 31175191
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    |||| |||||||||||||||||| ||||| |  |||||| ||||||||||||||||||| |||||    
T  31175255 taaaatcgattcgtaaattcgtaggagttaatataaaatgaaaattatataaaatttattatata 31175191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 42044219 - 42044179
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  42044219 tcgtatgagtttacctaaaattaaaattatttaaaatttat 42044179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 42611260 - 42611197
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || ||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  42611260 taaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaagtttattatat 42611197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 16710237 - 16710201
Alignment:
Q  83 tttacctaaaattaaaattatataaaatttatcatat 119  Q
    |||||||||||||||||||||||||||||||| ||||    
T  16710237 tttacctaaaattaaaattatataaaatttattatat 16710201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 17684473 - 17684437
Alignment:
Q  83 tttacctaaaattaaaattatataaaatttatcatat 119  Q
    |||||||||||||||||||||||||||||||| ||||    
T  17684473 tttacctaaaattaaaattatataaaatttattatat 17684437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 21486879 - 21486816
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || ||||||||||||| |||||||||||||||| || ||||||| ||||    
T  21486879 taaactcgactcgagaactcgtatgagtttagctaaaattaaaattatgtagaatttattatat 21486816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 33496776 - 33496834
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    |||| |||| || |||| ||||| ||||||| ||||||||||||||| |||||||||||    
T  33496776 taaattcgactcataaactcgtacgagtttatctaaaattaaaattaaataaaatttat 33496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 33886296 - 33886417
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||  |||| |||| | ||||| ||||| |||||||||||||||||||||    
T  33886296 gttttacaactcgagagtttatctcaactcgttttagctatgtaaactcgaatcgtaaattcgacttgtaaactcgtacgagtttacctaaaattaaaat 33886395  T
Q  101 tatataaaatttatcatatata 122  Q
    |||||||||||||| |||||||    
T  33886396 tatataaaatttattatatata 33886417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 33957956 - 33957835
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||  |||| |||| | ||||| ||||| |||||||||||||||||||||    
T  33957956 gttttacaactcgagagtttatctcaactcgttttagctatgtaaactcgaatcgtaaattcgacttgtaaactcgtacgagtttacctaaaattaaaat 33957857  T
Q  101 tatataaaatttatcatatata 122  Q
    |||||||||||||| |||||||    
T  33957856 tatataaaatttattatatata 33957835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 49452371 - 49452481
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    |||||||||||||||| |||||||||   ||| |||||||||| || ||||||||| |||  || ||||| |||||||||||||||||||||||||||||    
T  49452371 actcgagagtttatctcaactcgtttcgtctaggtaaattcgacttgtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaa 49452470  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  49452471 atttattatat 49452481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 5208617 - 5208730
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||||| |||||||||||||||| ||||    
T  5208617 gttttacaactcgagagtttacctcaactcgttttacctaggtaaactcgactggtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaat 5208716  T
Q  101 tatataaaatttat 114  Q
    | |||| |||||||    
T  5208717 tttatacaatttat 5208730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 30177028 - 30176908
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| | |||||| |||| || ||||||||||||||||||||| ||||||  ||||||||| |  |||| ||||| |||||||||||||||| ||||    
T  30177028 gttttacaattcgagaatttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgacttataaactcgtacgagtttacctaaaatt-aaat 30176930  T
Q  101 tatataaaatttatcatatata 122  Q
    |||| ||||||||| |||||||    
T  30176929 tataaaaaatttattatatata 30176908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7799197 - 7799102
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaatta 96  Q
    ||||||| ||||||||||||| || |||||||||||||||| |||| ||||||  ||||||||| ||||||| | ||| |||||||||||||||||    
T  7799197 gttttacaactcgagagtttacctcaactcgttttagctatataaactcgaatcgtaaactcgactcgtaaacttgtacgagtttacctaaaatta 7799102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 4006116 - 4006006
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||||| |||||||||||||||| ||||| |||| |    
T  4006116 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaattttataca 4006017  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  4006016 atttattatat 4006006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 41354189 - 41354079
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||||| |||||||||||||||| ||||| |||| |    
T  41354189 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaattttataca 41354090  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  41354089 atttattatat 41354079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 34019714 - 34019647
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatataa 123  Q
    |||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  34019714 taaacttgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatatataa 34019647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 50037957 - 50038075
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    |||||||  |||||||||||| || | ||||||||| ||||||||  ||||||  ||||||  | ||||||| || ||  ||||||||||||||||||||    
T  50037957 gttttacagctcgagagtttaccttatctcgttttacctatgtaagctcgaatcgtaaactt-actcgtaaactcttacaagtttacctaaaattaaaat 50038055  T
Q  101 tatataaaatttatcatata 120  Q
    |||||||||||||| |||||    
T  50038056 tatataaaatttattatata 50038075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 3594034 - 3593916
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || ||||||||||| ||| ||||| |||| |  |||||| || | |  |||||||| ||| ||| |||||||||||||    
T  3594034 gttttacaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaacttgacttgagaattcgtacgagattatctaaaattaaaat 3593935  T
Q  101 tatataaaatttatcatat 119  Q
    ||||||||| |||| ||||    
T  3593934 tatataaaaattattatat 3593916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 9174639 - 9174529
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| || |||| ||| | |||||||||||||||| ||||| |||| |    
T  9174639 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcataaactcgcacgagtttacctaaaattgaaattttataca 9174540  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  9174539 atttattatat 9174529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 18246894 - 18247004
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||| | || ||||||||||||| ||||| |||| |    
T  18246894 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgcacgaatttacctaaaattgaaattttataca 18246993  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  18246994 atttattatat 18247004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 34751037 - 34751095
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||||||| ||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  34751037 taaactcgaatcgtaaactcgtacgaatttacctaaaattaaaattatataaaatttat 34751095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 43855142 - 43855084
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||    
T  43855142 taaactcgactcataaactcgtacgagtttacctaaaattaaaattatataaaatttat 43855084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 51107951 - 51107841
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||| | || ||||||||||||| ||||| |||| |    
T  51107951 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgcacgaatttacctaaaattgaaattttataca 51107852  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  51107851 atttattatat 51107841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 42637521 - 42637573
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  42637521 taaactcgaattgtaaactcgtatgagtttacctaaaattaaaattatataaa 42637573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 28403319 - 28403370
Alignment:
Q  68 gtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  28403319 gtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatat 28403370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 42303771 - 42303818
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttatcatatat 121  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  42303771 tcgtatgactttacctaaaattaaaattatataaaatttattatatat 42303818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 47370928 - 47370991
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  47370928 taaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatttattatat 47370991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 49236365 - 49236423
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||||||| ||| ||| ||||| |||||||| ||||||||||||||||||||||||||    
T  49236365 taaactcgactcgaaaactcgtacgagtttacataaaattaaaattatataaaatttat 49236423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 1242682 - 1242746
Alignment:
Q  55 ataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    |||||||||| ||||||| ||||| |||||||||||| ||||||||| |||| ||||||| ||||    
T  1242682 ataaactcgaatcgtaaactcgtacgagtttacctaagattaaaattttatacaatttattatat 1242746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 8148064 - 8148001
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| ||||||| ||||| |||||||||||||||| ||||| |||| ||||||| ||||    
T  8148064 taaactcgaatcgtaaactcgtacgagtttacctaaaattgaaattttatacaatttattatat 8148001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 11578500 - 11578563
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| ||||||| ||||| |||||||||||||||| ||||| |||| ||||||| ||||    
T  11578500 taaactcgaatcgtaaactcgtacgagtttacctaaaattgaaattttatacaatttattatat 11578563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 32759390 - 32759501
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaatt-atataa 107  Q
    |||||||| |||| || ||||||||||  ||| |||||||||| |  || |||||| |||  |||||||| || |||||||||||| |||||| ||||||    
T  32759390 actcgagaatttacctcaactcgttttgtctaagtaaattcgactcgtacactcgactcgagaattcgtacgaatttacctaaaataaaaattaatataa 32759489  T
Q  108 aatttatcatat 119  Q
    ||||||| ||||    
T  32759490 aatttattatat 32759501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 1109022 - 1108969
Alignment:
Q  68 gtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||    
T  1109022 gtaaactcgtacgagtttacctaaaatt-aaattatataaaatttattatatata 1108969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 40431773 - 40431827
Alignment:
Q  66 tcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    ||||||||| ||| ||||||| |||||||||||||||||| |||||||| |||||    
T  40431773 tcgtaaatttgtacgagtttatctaaaattaaaattatatcaaatttattatata 40431827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1109063 - 1109018
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaa 46  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||    
T  1109063 gttttacaattcgagagtttatctcaactcgttttagctatgtaaa 1109018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 15928334 - 15928277
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaattta 113  Q
    ||||||||| |||  || ||||| ||||||||||||||||| ||||||||||||||||    
T  15928334 taaactcgactcgagaactcgtacgagtttacctaaaattagaattatataaaattta 15928277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 8122696 - 8122656
Alignment:
Q  82 gtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  8122696 gtttacctaaaattaaaattatgtaaaatttattatatata 8122656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 2292626 - 2292676
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatata 106  Q
    ||||||||| |||  || ||||| |||||||||||||||||||||||||||    
T  2292626 taaactcgactcgggaactcgtacgagtttacctaaaattaaaattatata 2292676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 8148098 - 8148044
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcg 63  Q
    ||||||||||||| || ||||||||||||||| ||||| ||||||  ||||||||    
T  8148098 actcgagagtttacctcaactcgttttagctaggtaaactcgaatcgtaaactcg 8148044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 49971049 - 49971107
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||||||| |||  || ||||| ||||||||||||||||||||||| ||||| |||||    
T  49971049 taaactcgactcgagaactcgtacgagtttacctaaaattaaaattaaataaagtttat 49971107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 19863615 - 19863578
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatt 111  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  19863615 tcgtacgagtttaactaaaattaaaattatataaaatt 19863578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42637479 - 42637532
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaatt 54  Q
    ||||||| |||| ||||||||||| |||||||| || ||||||||| |||||||    
T  42637479 gttttacaactcaagagtttatctcaactcgttatacctatgtaaactcgaatt 42637532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 48965899 - 48965932
Alignment:
Q  80 gagtttacctaaaattaaaattatataaaattta 113  Q
    ||||| ||||||||||||||||||||||||||||    
T  48965899 gagttaacctaaaattaaaattatataaaattta 48965932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 52182803 - 52182770
Alignment:
Q  2 ttttacgactcgagagtttatctaaactcgtttt 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  52182803 ttttacgactcgagagtttatctcaactcgtttt 52182770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31995655 - 31995776
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| |  ||||||||||||||||||||| |  |||| ||||||||| ||||||| ||||| |||||||||||||||||||||    
T  31995655 gttttacaactcgagagtttaccacaactcgttttagctatgtaaacttaaattgtaaactcgactcgtaaactcgtacgagtttacctaaaattaaaat 31995754  T
Q  101 tatataaaatttatcatatata 122  Q
    |||||||||||||| |||||||    
T  31995755 tatataaaatttattatatata 31995776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 6789129 - 6789019
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||||| |||||||||||||||| ||||| |||| |    
T  6789129 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaattttataca 6789030  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  6789029 atttattatat 6789019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 10110670 - 10110780
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||| | |||||||||||||||||||||| |||| |    
T  10110670 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgcacgagtttacctaaaattaaaattttataca 10110769  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  10110770 atttattatat 10110780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 1462740 - 1462850
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| | ||| |||||||||||||||| ||||| |||| |    
T  1462740 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactagtacgagtttacctaaaattgaaattttataca 1462839  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  1462840 atttattatat 1462850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 24202846 - 24202783
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| | || |||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  24202846 taaactcgacttgtgaattcgtacgagtttacctaaaattaaaattaaataaaatttattatat 24202783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 16439434 - 16439376
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||||||| |||  || ||||| |||||||||||||||||||||||||||||||||||    
T  16439434 taaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatttat 16439376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 31534483 - 31534528
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  31534483 tcgtacgagtttacctaaaattaaaattatataaaatttattatat 31534528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 31975111 - 31975175
Alignment:
Q  55 ataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    |||||||||| |||  || ||||| || |||||||||||||||||||||||||||||||| ||||    
T  31975111 ataaactcgactcgagaactcgtacgattttacctaaaattaaaattatataaaatttattatat 31975175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7834997 - 7835059
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcg 63  Q
    ||||||| ||| ||||||||| || ||||||||||||||||||||| ||||||  ||||||||    
T  7834997 gttttacaacttgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 7835059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 32567678 - 32567716
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaattt 112  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  32567678 tcgtacgagtttacctaaaattaaaattatataaaattt 32567716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 2607655 - 2607610
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||    
T  2607655 tcgtacgagtttacctaaaattaaaactatataaaatttattatat 2607610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 8779039 - 8779076
Alignment:
Q  85 tacctaaaattaaaattatataaaatttatcatatata 122  Q
    |||||||||||||||||||||||||||||| |||||||    
T  8779039 tacctaaaattaaaattatataaaatttattatatata 8779076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 3001033 - 3000915
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || ||||||||||| ||| | |||||||| |  ||||||||| |||| || |  ||  ||||||| ||||||| ||||    
T  3001033 gttttacaactcgagagtttacctcaactcgttttatctaggaaaattcgactcgtaaactcgaatcgtgaacttttacaagtttacttaaaattgaaat 3000934  T
Q  101 tatataaaatttatcatat 119  Q
    | ||||  |||||| ||||    
T  3000933 tttatactatttattatat 3000915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 54561897 - 54561777
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||| ||||||  ||||||||| ||||||| ||||| |||||||||||||||| ||||    
T  54561897 gttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgactcgtaaactcgtacgagtttacctaaaatt-aaat 54561799  T
Q  101 tatataaaatttatcatatata 122  Q
    |||||||||||||| |||||||    
T  54561798 tatataaaatttattatatata 54561777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 29965839 - 29965952
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| |||||| |||||| || ||||||||||||||||||||| || |||  ||| ||||| ||||||| | ||| |||||||||||||||||||||    
T  29965839 gttttacaactcgaaagtttacctcaactcgttttagctatgtaaactcaaatcgtaatctcgactcgtaaactagtacgagtttacctaaaattaaaat 29965938  T
Q  101 tatataaaatttat 114  Q
    ||||||||||||||    
T  29965939 tatataaaatttat 29965952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 41469682 - 41469748
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41469682 taaactcgactcgtaaactcgtatgagtttacctaaaattaaaattatataaaatttattatatata 41469748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 8562550 - 8562616
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  8562550 taaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatttattatatata 8562616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 25014116 - 25014008
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||| | ||||| ||||||||             || |||||||||||||||||||||    
T  25014116 gttttacaactcgagagtttacctcaactcgttttagctatgtaaacttgaattgtaaactcg-------------tacgagtttacctaaaattaaaat 25014030  T
Q  101 tatataaaatttatcatatata 122  Q
    |||||||||||||| |||||||    
T  25014029 tatataaaatttattatatata 25014008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 6486761 - 6486891
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||| |||||| ||||||||| | ||    | | ||  |  | |||||||||||||||    
T  6486761 gttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcataaactcg-tacgagtttacctaaaa--tgacctaaaattaaaat 6486857  T
Q  101 tatataaaatttatcatatataacacatgtaagc 134  Q
    |||||||||||||| ||||||| || ||||||||    
T  6486858 tatataaaatttattatatatagcatatgtaagc 6486891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 8084939 - 8084829
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || |||||||||||  || ||||| |||| |  ||||||||| ||||||| ||||| |||||||||||||||| ||||| |||| |    
T  8084939 actcgagagtttacctcaactcgttttatttaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaattttataca 8084840  T
Q  109 atttatcatat 119  Q
    | |||| ||||    
T  8084839 acttattatat 8084829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 21305720 - 21305840
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaa-ttataaactcgattcgtaaattcgtatgagtttacctaaaattaaaa 99  Q
    ||||||||| || || |||||  | |||||||||||  ||||||||||  || || ||||||||| || |||| ||||||||||||||| |||||||  |    
T  21305720 gttttacgattcaagggtttacttcaactcgttttacttatgtaaattttaaattgtaaactcgactcataaactcgtatgagtttacccaaaattatca 21305819  T
Q  100 ttatataaaatttatcatata 120  Q
    ||||||||||||||| |||||    
T  21305820 ttatataaaatttattatata 21305840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 33141066 - 33141003
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  33141066 taaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatttattatat 33141003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 50517836 - 50517773
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || || |||||||||| ||||||||||||||||||||||||||||||||    
T  50517836 taaactcgactcgagaactcatatgagtttatctaaaattaaaattatataaaatttatcatat 50517773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 9973465 - 9973400
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||||||| || |||| ||||| |||||||||||||||| |||||||||||||||||| |||||||    
T  9973465 taaactcgactcataaactcgtacgagtttacctaaaatt-aaattatataaaatttattatatata 9973400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 17503272 - 17503330
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||||||| |||  || ||||||||||||||||||||||||||||| |||||||||||    
T  17503272 taaactcgactcgagaactcgtatgagtttacctaaaattaaaattaaataaaatttat 17503330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 23170161 - 23170219
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||||||| ||| ||| |||||  ||||||||||||||||||||||||||||||||||    
T  23170161 taaactcgaatcggaaactcgtacaagtttacctaaaattaaaattatataaaatttat 23170219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40163401 - 40163339
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcg 63  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||| ||||||  ||||||||    
T  40163401 gttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 40163339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40487067 - 40487129
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcg 63  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||| ||||||  ||||||||    
T  40487067 gttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 40487129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 56423420 - 56423538
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||| ||||||  |||||||| | ||    | | ||  |  |||||||||||||||||    
T  56423420 gttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg-tacgagtttacctaaaa--ttacctaaaattaaaat 56423516  T
Q  101 tatataaaatttatcatatata 122  Q
    |||||||||||||| |||||||    
T  56423517 tatataaaatttattatatata 56423538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 872289 - 872189
Alignment:
Q  2 ttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaatt 101  Q
    |||||| |||| |||||||| || ||||||||||  ||| ||||| |||| |  ||||||||| |||  || ||||| ||||||||||||||||||||||    
T  872289 ttttacaactcaagagtttacctcaactcgttttgtctaggtaaactcgactcgtaaactcgactcgagaactcgtacgagtttacctaaaattaaaatt 872190  T
Q  102 a 102  Q
    |    
T  872189 a 872189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 4511370 - 4511474
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||| ||||  ||| ||||||| || |  ||||||||  | |  || ||||| |||||||||||||||||||||||||||||    
T  4511370 actcgagagtttacctcaactctttttgactaggtaaatttgagtcgtaaactcgtcttgagaaatcgtacgagtttacctaaaattaaaattatataaa 4511469  T
Q  109 attta 113  Q
    |||||    
T  4511470 attta 4511474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 12755033 - 12754993
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  12755033 tcgtacgagtttacctaaaattaaaattatataaaatttat 12754993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 26449241 - 26449175
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatataa 123  Q
    |||||| || ||||||| ||||| |||||||||||||||| ||||||||||||||||||  |||||||    
T  26449241 taaacttgaatcgtaaactcgtacgagtttacctaaaatt-aaattatataaaatttattttatataa 26449175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 26490635 - 26490698
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    |||||||||||||  || || || ||||||||||||||||||||||||||||| ||||| ||||    
T  26490635 taaactcgattcgagaactcatacgagtttacctaaaattaaaattatataaagtttattatat 26490698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 26973046 - 26973003
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttatcat 117  Q
    ||||| |||||||||| |||||||||||||||||||||||||||    
T  26973046 tcgtacgagtttaccttaaattaaaattatataaaatttatcat 26973003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 29469864 - 29469801
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| ||||||| ||||| |||||||||||||||| ||||| |||| ||||||| ||||    
T  29469864 taaactcgactcgtaaactcgtacgagtttacctaaaattgaaattttatacaatttattatat 29469801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 29509420 - 29509483
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || ||||| |||||||||||||||||||||||||| |||||||| ||||    
T  29509420 taaactcgactcgagaactcgtacgagtttacctaaaattaaaattatattaaatttattatat 29509483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 40487109 - 40487172
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| ||||||| ||||| ||||||| ||| |||||||||| |||||||||||| ||||    
T  40487109 taaactcgaatcgtaaactcgtacgagtttatctataattaaaattttataaaatttattatat 40487172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 40163359 - 40163306
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaat 110  Q
    ||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||    
T  40163359 taaactcgaatcgtaaactcgtaggagtttacctaaaatt-aaattatataaaat 40163306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 42936934 - 42937044
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || || ||||||||  ||  |||| |||| |  ||||||||| ||||||| ||||| |||| ||||||||||| ||||| |||| |    
T  42936934 actcgagagtttacctcaattcgttttacttagataaactcgactcgtaaactcgaatcgtaaactcgtacgagtctacctaaaattgaaattttataca 42937033  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  42937034 atttattatat 42937044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 51967747 - 51967709
Alignment:
Q  84 ttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  51967747 ttacctaaaattaaaattatataaaatttattatatata 51967709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41469640 - 41469685
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaa 46  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||    
T  41469640 gttttacaactcgagagtttacctcaactcgttttagctatgtaaa 41469685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 22480370 - 22480318
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    |||| |||| ||||||| |||||| |||||| |||||||||||||||||||||    
T  22480370 taaattcgactcgtaaactcgtatcagtttatctaaaattaaaattatataaa 22480318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 55166076 - 55166036
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  55166076 tcgtatgagtttacttaaaattaaaattaaataaaatttat 55166036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26449283 - 26449221
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcg 63  Q
    ||||||| |||||| |||||| || ||||||||||||||||||||| | ||||  ||||||||    
T  26449283 gttttacaactcgatagtttacctcaactcgttttagctatgtaaacttgaatcgtaaactcg 26449221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 23670961 - 23671026
Alignment:
Q  54 tataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||||| ||||||| || || ||||||||||| |||| ||||| |||| ||||||| ||||    
T  23670961 tataaactcgactcgtaaactcatacgagtttacctagaattgaaattttatacaatttattatat 23671026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 32890601 - 32890556
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||| |||||||||||||||||||||||| | |||||||| ||||    
T  32890601 tcgtacgagtttacctaaaattaaaattattttaaatttattatat 32890556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 37400528 - 37400573
Alignment:
Q  66 tcgtaaattcgtatgagtttacctaaaattaaaattatataaaatt 111  Q
    |||||||||||||||||||||| | | |||||||| ||||||||||    
T  37400528 tcgtaaattcgtatgagtttacttcatattaaaataatataaaatt 37400573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 24454289 - 24454249
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||| ||||||| ||||||||||||||| |||||||||||    
T  24454289 tcgtacgagtttatctaaaattaaaattaaataaaatttat 24454249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 25842435 - 25842463
Alignment:
Q  81 agtttacctaaaattaaaattatataaaa 109  Q
    |||||||||||||||||||||||||||||    
T  25842435 agtttacctaaaattaaaattatataaaa 25842463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 9817996 - 9818116
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||| ||||||  ||||||||| ||||||| ||||| ||| |||||||||||||||||    
T  9817996 gttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgactcgtaaactcgtacgag-ttacctaaaattaaaat 9818094  T
Q  101 tatataaaatttatcatatata 122  Q
    |||||||||||||| |||||||    
T  9818095 tatataaaatttattatatata 9818116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 47466822 - 47466942
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||| | ||||| ||||| |||||||||||||||||||||    
T  47466822 gttttacaactcgagagtttatctcaactcgttttagctatgtaaactcgaatcgtaaactcgacttgtaaactcgtacgagtttacctaaaattaaaat 47466921  T
Q  101 tatataaaatttatcatatata 122  Q
    ||| |||||||||| |||||||    
T  47466922 tat-taaaatttattatatata 47466942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 30237902 - 30238021
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||||| ||||||||| | || |||| |||||| ||||||||||||||| ||||||||||| | ||||||| ||| ||||||||||||||||||||     
T  30237902 gttttacgattcgagagttcagctcaacttgttttacctatgtaaattcgaactataaactcgacttgtaaatttgtacgagtttacctaaaattaaaag 30238001  T
Q  101 tatataaaatttatcatata 120  Q
    |||||||||||||| |||||    
T  30238002 tatataaaatttattatata 30238021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 27262037 - 27261916
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattc-gtaaattcgtatgagtttacctaaaattaaaa 99  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||| | ||||  ||||||||| || ||||| ||||| |||||||||||||||| |||    
T  27262037 gttttacaactcgagagtttacctcaactcgttttagctatgtaaacttgaatcgtaaactcgactcagtaaactcgtacgagtttacctaaaatt-aaa 27261939  T
Q  100 ttatataaaatttatcatatata 122  Q
    ||||||||||||||| |||||||    
T  27261938 ttatataaaatttatgatatata 27261916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 49296862 - 49296752
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||||| |||||||||||||||||||||| |||| |    
T  49296862 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattttataca 49296763  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  49296762 atttattatat 49296752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 7436869 - 7436979
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||   || ||||| |||| |  ||||||||| |||  || ||||| |||||||||||||||||||||||||||||    
T  7436869 actcgagagtttacctcaactcgttttgcttaggtaaactcgactcgtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaa 7436968  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  7436969 atttattatat 7436979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 8599704 - 8599594
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||| | |||||||||||||||| ||||| |||| |    
T  8599704 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgcacgagtttacctaaaattgaaattttataca 8599605  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  8599604 atttattatat 8599594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 49459157 - 49459047
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || |||||||||   ||| ||||||| || |  |||||| || |||  |||||||| |||||||||||||||||||||||||||||    
T  49459157 actcgagagtttacctcaactcgtttcgtctaggtaaatttgactcgtaaacttgactcgagaattcgtacgagtttacctaaaattaaaattatataaa 49459058  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  49459057 atttattatat 49459047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 53644755 - 53644876
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||||||||             ||||||| ||||| |||||||||||||||| ||||    
T  53644755 gttttacaactcgagagtttacctcaactcgttttagctatgtaaattcgaa-------------tcgtaaactcgtacgagtttacctaaaatt-aaat 53644840  T
Q  101 tatataaaatttatcat--atataacacatgtaagc 134  Q
    |||||||||||||| ||  |||||||| ||||||||    
T  53644841 tatataaaatttattatacatataacatatgtaagc 53644876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 29650914 - 29650839
Alignment:
Q  32 ttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataa 107  Q
    ||||| ||||||||| ||||||| ||||||||||| ||||| ||||| || | |||||||||||||||||||||||    
T  29650914 ttttatctatgtaaactcgaattgtaaactcgatttgtaaactcgtacgaatgtacctaaaattaaaattatataa 29650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 27163091 - 27163027
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    |||| |||| ||||||| |||||  |||||||||||||||||||||||||||||||||| |||||    
T  27163091 taaattcgactcgtaaactcgtacaagtttacctaaaattaaaattatataaaatttattatata 27163027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 33694058 - 33693948
Alignment:
Q  9 actcgagagtttatctaaactcgttttagcta-tgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataa 107  Q
    ||||||||||||| || |||||||||| |||| |||||| |||| |  ||||||| | |||  || ||||| ||||||||| ||||||||||||||||||    
T  33694058 actcgagagtttaccttaactcgtttt-gctaatgtaaactcgactcgtaaactcaactcgagaactcgtacgagtttaccaaaaattaaaattatataa 33693960  T
Q  108 aatttatcatat 119  Q
    ||||||| ||||    
T  33693959 aatttattatat 33693948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 45731361 - 45731311
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatata 106  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||||||    
T  45731361 taaactcgaattgtaaactcgtatgagtttacctaaaattaaaattatata 45731311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 45731395 - 45731341
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcg 63  Q
    ||||||||||||| || ||||||||||||||||||||| ||||||| ||||||||    
T  45731395 actcgagagtttacctcaactcgttttagctatgtaaactcgaattgtaaactcg 45731341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 49294338 - 49294273
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||||||| ||||||| | ||| ||||||| ||||||||||| |||||||||||||||||||||||    
T  49294338 taaactcgaatcgtaaacttgtacgagtttatctaaaattaaa-ttatataaaatttatcatatata 49294273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 32766705 - 32766605
Alignment:
Q  11 tcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaat 110  Q
    ||||||||||| || || |||||||  ||||||| | |||| |  ||||||||| | |  || ||||| |||||||||||||||||||||||||||||||    
T  32766705 tcgagagtttacctcaattcgttttgtctatgtatactcgactcgtaaactcgacttgagaactcgtacgagtttacctaaaattaaaattatataaaat 32766606  T
Q  111 t 111  Q
    |    
T  32766605 t 32766605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 53836660 - 53836596
Alignment:
Q  55 ataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    |||||||||| ||| ||| ||||| |||||||||||||||||||||| |||| ||||||| ||||    
T  53836660 ataaactcgactcgaaaactcgtacgagtttacctaaaattaaaattttatacaatttattatat 53836596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 4962092 - 4962131
Alignment:
Q  80 gagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  4962092 gagtttacctaaaattaaaattatataaaatttattatat 4962131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 24064038 - 24063976
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  24064038 taaactcgactcgagaactcgtatgagtttacctaaa-ttaaaattatataaaatttattatat 24063976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 43173636 - 43173573
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || |||||||||||||| |||||||||||||| ||||||||||| ||||    
T  43173636 taaactcgactcgagaactcgtatgagtttacataaaattaaaattacataaaatttattatat 43173573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 40064883 - 40064818
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||||||| ||||||| ||||| ||||||| | ||||||||| ||||||||||||||| |||||||    
T  40064883 taaactcgaatcgtaaactcgtacgagtttatccaaaattaaa-ttatataaaatttattatatata 40064818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 31164220 - 31164168
Alignment:
Q  68 gtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    ||||| |||||| |||||| |||| ||||||||||||||||| ||||||||||    
T  31164220 gtaaactcgtataagtttatctaatattaaaattatataaaaattatcatata 31164168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 27988294 - 27988341
Alignment:
Q  55 ataaactcgattcgtaaattcgtatgagtttacctaaaattaaaatta 102  Q
    |||||||||||| |  |||||||| |||||||||||||||||||||||    
T  27988294 ataaactcgatttgagaattcgtacgagtttacctaaaattaaaatta 27988341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 37833430 - 37833365
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||||||| ||||||| |||||  | || ||||||||||||| ||||||||||||||| |||||||    
T  37833430 taaactcgaatcgtaaactcgtacaaattaacctaaaattaaa-ttatataaaatttattatatata 37833365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 22488419 - 22488529
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| ||||||||||||| || ||||||||||| |||  |||| ||||        ||||| | ||||| ||||| |||||||||||||||| ||||    
T  22488419 gttttacaactcgagagtttacctcaactcgttttacctagttaaactcga--------ctcgaattgtaaactcgtacgagtttacctaaaattgaaat 22488510  T
Q  101 tatataaaatttatcatat 119  Q
    | |||| ||||||| ||||    
T  22488511 tttatacaatttattatat 22488529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 37833463 - 37833410
Alignment:
Q  10 ctcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcg 63  Q
    |||||||||||| || ||||||||||| ||||||||| ||||||  ||||||||    
T  37833463 ctcgagagtttacctcaactcgttttaactatgtaaactcgaatcgtaaactcg 37833410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 13908747 - 13908628
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| | ||||||||||| || |||||||||||  |||||||| ||||||  ||||||||| ||||||||||||| |||||||||||||||||||||    
T  13908747 gttttacaattcgagagtttacctcaactcgttttaattatgtaaactcgaatcgtaaactcgactcgtaaattcgtacgagtttacctaaaattaaaat 13908648  T
Q  101 tatataaaatttatcatata 120  Q
    |||||||||||||| |||||    
T  13908647 tatataaaatttattatata 13908628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 18899256 - 18899366
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||||| |||||||| ||||||| ||||| |||| |    
T  18899256 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacttaaaattgaaattttataca 18899355  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  18899356 atttattatat 18899366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 28546446 - 28546359
Alignment:
Q  32 ttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    ||||| ||||||||||| ||||  ||||||||| ||||||| | |||  |||||||||||||||||||||||||||||||||| |||||    
T  28546446 ttttatctatgtaaatttgaatcgtaaactcgactcgtaaaatagtac-agtttacctaaaattaaaattatataaaatttattatata 28546359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 18726933 - 18727039
Alignment:
Q  13 gagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaattt 112  Q
    ||||||||| || ||||||||||   || ||||| |||| |  ||||||||| |||  || ||||| |||||||||||||||||||||||||||||||||    
T  18726933 gagagtttacctcaactcgttttgcttaggtaaactcgattcgtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaattt 18727032  T
Q  113 atcatat 119  Q
    || ||||    
T  18727033 attatat 18727039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 45160655 - 45160720
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    ||||||||| ||||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||    
T  45160655 taaactcgaatcgtaaactcgtacgagtttacctaaaatt-aaattatataaaatttattatatata 45160720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 41979450 - 41979390
Alignment:
Q  54 tataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    |||||| |||| || |||| ||||| |||||||||||||||||||||||||||||||||||    
T  41979450 tataaattcgaatcataaactcgtacgagtttacctaaaattaaaattatataaaatttat 41979390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 2104364 - 2104309
Alignment:
Q  66 tcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatat 121  Q
    ||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||    
T  2104364 tcgtaaattcgtacgagtttatctaaaattaaaattatataatatttattatatat 2104309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 9731693 - 9731630
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  9731693 taaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatttattatat 9731630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 30851422 - 30851383
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaattta 113  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30851422 tcgtatgagtttacctaaaattaaaattatataaaattta 30851383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 13327682 - 13327743
Alignment:
Q  60 ctcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatatat 121  Q
    ||||| ||||||| ||||| |||||||||||||||||| ||| ||||||| |||||||||||    
T  13327682 ctcgactcgtaaactcgtacgagtttacctaaaattaatattgtataaaaattatcatatat 13327743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 38411938 - 38411999
Alignment:
Q  2 ttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcg 63  Q
    |||||| ||||||||||||| || ||||||||||||||||||||| ||||||  ||||||||    
T  38411938 ttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 38411999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 38295092 - 38295131
Alignment:
Q  80 gagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  38295092 gagtttacctaaaattaaaattatataaaatttattatat 38295131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 38411979 - 38412032
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaat 110  Q
    ||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||    
T  38411979 taaactcgaatcgtaaactcgtacgagtttacctaaaatt-aaattatataaaat 38412032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 31846543 - 31846588
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||| ||||||||||||| ||||||||||||||||||||| ||||    
T  31846543 tcgtacgagtttacctaaatttaaaattatataaaatttattatat 31846588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33263543 - 33263482
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactc 62  Q
    ||||||| ||||||||||||| || |||| |||||||||||||||| ||||||  |||||||    
T  33263543 gttttacaactcgagagtttacctcaacttgttttagctatgtaaactcgaatcgtaaactc 33263482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 37790428 - 37790363
Alignment:
Q  55 ataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    |||||||||| ||||||| ||||| |||||||| ||||| ||||||||||| ||| |||| |||||    
T  37790428 ataaactcgactcgtaaaatcgtacgagtttacgtaaaagtaaaattatattaaaattattatata 37790363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 42242541 - 42242478
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || ||||| ||||| |||||||||||||||||| |||||||||| ||||    
T  42242541 taaactcgactcgagaactcgtacgagttgacctaaaattaaaattatgtaaaatttattatat 42242478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 40830356 - 40830311
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||| || ||||||||||||||||||||| |||||||||| ||||    
T  40830356 tcgtacgaatttacctaaaattaaaattatttaaaatttatgatat 40830311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 34353452 - 34353412
Alignment:
Q  69 taaattcgtatgagttt-acctaaaattaaaattatataaa 108  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  34353452 taaattcgtacgagttttacctaaaattaaaattatataaa 34353412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 16149 - 16259
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||||| |||||||||||||||| ||||| |||| |    
T  16149 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaattttataca 16248  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  16249 atttattatat 16259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 6387204 - 6387322
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaat 100  Q
    ||||||| |||| |||||||| || ||||||||||   || ||||| || | |  |||||||||||||  |||||||| |||||||||||||||||||||    
T  6387204 gttttacaactcaagagtttacctcaactcgttttgcttaggtaaactccactcttaaactcgattcgagaattcgtacgagtttacctaaaattaaaat 6387303  T
Q  101 tatataaaatttatcatat 119  Q
    |||||||||||||| ||||    
T  6387304 tatataaaatttattatat 6387322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 19484961 - 19484851
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || ||||||||||| ||| ||||| |||| |  ||||||||| ||||||| ||||| |||||||||||||||| ||||| |||| |    
T  19484961 actcgagagtttacctcaactcgttttacctaggtaaactcgactcgtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaattttataca 19484862  T
Q  109 atttatcatat 119  Q
    |||||| ||||    
T  19484861 atttattatat 19484851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 4870524 - 4870588
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    |||||| || ||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||    
T  4870524 taaacttgaatcgtaaactcgtacgagtttacctaaaattaatattatataaaatttattatata 4870588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 26619985 - 26620048
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  26619985 taaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatttattatat 26620048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 8029212 - 8029269
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaattta 113  Q
    ||||||||| |||  || ||||| ||||||||||||||||||||||||||||||||||    
T  8029212 taaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaattta 8029269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 27974277 - 27974377
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || || |  ||||  ||| ||||| |||| || ||||||||| |||  || |||||| ||||||||||||||||||||||||||||    
T  27974277 actcgagagtttacctcaatttattttgtctaggtaaactcgacttgtaaactcgactcgagaactcgtataagtttacctaaaattaaaattatataaa 27974376  T
Q  109 a 109  Q
    |    
T  27974377 a 27974377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 28031546 - 28031646
Alignment:
Q  9 actcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||||||| || || |  ||||  ||| ||||| |||| || ||||||||| |||  || |||||| ||||||||||||||||||||||||||||    
T  28031546 actcgagagtttacctcaatttattttgtctaggtaaactcgacttgtaaactcgactcgagaactcgtataagtttacctaaaattaaaattatataaa 28031645  T
Q  109 a 109  Q
    |    
T  28031646 a 28031646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 33177259 - 33177311
Alignment:
Q  68 gtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||| |||||    
T  33177259 gtaaactcgtaccagtttacctaaaattaaaattatataaaatttattatata 33177311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 3007178 - 3007241
Alignment:
Q  57 aaactcgattcgtaaattcgtatgagtttacctaaaattaaaat-tatataaaatttatcatat 119  Q
    ||||||||||||  |||||||| |||||||||||||||||||||  ||||||||||||| ||||    
T  3007178 aaactcgattcgagaattcgtacgagtttacctaaaattaaaatcaatataaaatttattatat 3007241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 42423948 - 42423885
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| |||  || ||||| |||||||||||||||||||||||||| |||||||| ||||    
T  42423948 taaactcgactcgagaactcgtacgagtttacctaaaattaaaattatattaaatttattatat 42423885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 18985049 - 18985015
Alignment:
Q  80 gagtttacctaaaattaaaattatataaaatttat 114  Q
    |||||||||||||||||||||||||||||||||||    
T  18985049 gagtttacctaaaattaaaattatataaaatttat 18985015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 24082912 - 24082867
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||    
T  24082912 tcgtacgagtttacctaaaattaatattatataaaatttattatat 24082867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 12521765 - 12521817
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    |||||||||||||  || ||||  |||||||||||||||||||||||||||||    
T  12521765 taaactcgattcgagaactcgtgcgagtttacctaaaattaaaattatataaa 12521817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 27869087 - 27869195
Alignment:
Q  11 tcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaat 110  Q
    ||||||||||| || || |||||||   || |||||||||| |  |||| |||| |||  || ||| | |||||||||||||| ||||||||||||||||    
T  27869087 tcgagagtttacctcaattcgttttgcttaggtaaattcgattcgtaaattcgactcgagaactcgaacgagtttacctaaaaataaaattatataaaat 27869186  T
Q  111 ttatcatat 119  Q
    |||| ||||    
T  27869187 ttattatat 27869195  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 35880088 - 35880048
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||| ||||||| ||||||||||||||| |||||||||||    
T  35880088 tcgtacgagtttatctaaaattaaaattaaataaaatttat 35880048  T

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Target: scaffold0118 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 38579 - 38484
Alignment:
Q  13 gagagtttatctaaactcgttttagctatgtaaattcgaattataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaa 108  Q
    ||||||||| || |||| ||||||  |||||||| | ||||  | ||||||||| |||||  ||||||||||||||||| ||||||||||||||||    
T  38579 gagagtttacctcaacttgttttacttatgtaaacttgaatcgtgaactcgatttgtaaacccgtatgagtttacctaacattaaaattatataaa 38484  T

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Target: scaffold0246 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25006 - 25068
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaattataaactcg 63  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||| ||||||  ||||||||    
T  25006 gttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcg 25068  T

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Target: scaffold0246; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 25048 - 25111
Alignment:
Q  56 taaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatat 119  Q
    ||||||||| ||||||| ||||| ||||||| ||| |||||||||| |||||||||||| ||||    
T  25048 taaactcgaatcgtaaactcgtacgagtttatctataattaaaattttataaaatttattatat 25111  T

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Target: scaffold0246; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2021 - 1970
Alignment:
Q  1 gttttacgactcgagagtttatctaaactcgttttagctatgtaaattcgaa 52  Q
    ||||||| ||||| ||||||| || ||||||||||||||||||||| |||||    
T  2021 gttttacaactcgggagtttacctcaactcgttttagctatgtaaactcgaa 1970  T

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Target: scaffold0246; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 1968 - 1926
Alignment:
Q  80 gagtttacctaaaattaaaattatataaaatttatcatatata 122  Q
    |||||||||||||||||||||||| |||||||||  |||||||    
T  1968 gagtttacctaaaattaaaattatgtaaaatttaatatatata 1926  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 136266 - 136201
Alignment:
Q  55 ataaactcgattcgtaaattcgtatgagtttacctaaaattaaaattatataaaatttatcatata 120  Q
    |||||||||| |||  || ||| | ||||||||||||||||||||||||||||||||||| |||||    
T  136266 ataaactcgactcgagaactcgcacgagtttacctaaaattaaaattatataaaatttattatata 136201  T

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Target: scaffold0116 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 4965 - 5005
Alignment:
Q  74 tcgtatgagtttacctaaaattaaaattatataaaatttat 114  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  4965 tcgtacgagtttacctaaaattaaaattaaataaaatttat 5005  T

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