View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11180A_low_151 (Length: 246)
Name: NF11180A_low_151
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_151 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 42072077 - 42071871
Alignment:
| Q |
22 |
caaagaattggttcacaaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42072077 |
caaagaattggttcacaaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattga |
42071978 |
T |
|
| Q |
122 |
cactgttagtctgacttgctctacaggagaatcatccacttctgtgtcatcatctgcatcacacacatacaacaatgtaaacaactatgaagcattgaca |
221 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42071977 |
cactgttagtctgacttgctctataggagaatcatccacttctgtgtcatcatctgcatcacacacatacaacaatgtaaacaactatgaagcattgaca |
42071878 |
T |
|
| Q |
222 |
cagacac |
228 |
Q |
| |
|
||||||| |
|
|
| T |
42071877 |
cagacac |
42071871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 42055875 - 42055715
Alignment:
| Q |
22 |
caaagaattggttcacaaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattga |
121 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | | |||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
42055875 |
caaagaattggttcacaaaggcaaggacaatgcaacatgccaaaccaataatccatgtcctaaatgtcagtgctggttgtgttgggtcgtctgttgttga |
42055776 |
T |
|
| Q |
122 |
cactgttagtctgacttgctctacaggagaatcatccacttctgtgtcatcatctgcatca |
182 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42055775 |
cactgttagtctgacctgctctattggagaatcatccacttctgtgtcatcatctgcatca |
42055715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 42081025 - 42080865
Alignment:
| Q |
22 |
caaagaattggttcacaaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattga |
121 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | | |||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
42081025 |
caaagaattggttcacaaaggcaaggacaatgcaacatgccaaaccaataatccatgtcctaaatgtcagtgctggttgtgttgggtcgtctgttgttga |
42080926 |
T |
|
| Q |
122 |
cactgttagtctgacttgctctacaggagaatcatccacttctgtgtcatcatctgcatca |
182 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42080925 |
cactgttagtctgacctgctctattggagaatcatccacttctgtgtcatcatctgcatca |
42080865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University