View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_155 (Length: 245)
Name: NF11180A_low_155
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_155 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 41 - 241
Target Start/End: Complemental strand, 2803404 - 2803204
Alignment:
| Q |
41 |
tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagt |
140 |
Q |
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| T |
2803404 |
tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagt |
2803305 |
T |
|
| Q |
141 |
ctcacattatttaaagaggtggaggttgcacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctc |
240 |
Q |
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|||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
2803304 |
ctcacattgtttaaagaagtggaggttgaacattctataaaagagatgacccataaacttaatgtcttaacgttttgggtaaaagtgtgatgtccaactc |
2803205 |
T |
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| Q |
241 |
a |
241 |
Q |
| |
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| |
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| T |
2803204 |
a |
2803204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 33561547 - 33561499
Alignment:
| Q |
183 |
gagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgat |
231 |
Q |
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| T |
33561547 |
gagaggacccataaactcattgtcttaaggttttgggtaagagtgtgat |
33561499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 36005971 - 36005930
Alignment:
| Q |
188 |
gacccataaactcaatgtcttaacgttttgggtaaaagtgtg |
229 |
Q |
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| T |
36005971 |
gacccataaactcattgccttaaggttttgggtaaaagtgtg |
36005930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 31468841 - 31468797
Alignment:
| Q |
188 |
gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatg |
232 |
Q |
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| T |
31468841 |
gacccataaactcattgccttaaggttttgggtaagagtgtgatg |
31468797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 10351325 - 10351209
Alignment:
| Q |
127 |
tgtaggttaaaagtctcacattatttaaagaggtggaggttgcacattctataaaagagatgacccataaactcaatgtcttaacg--ttttgggtaaaa |
224 |
Q |
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|||| |||| |||||||||||| |||| | | |||||||| ||||| |||| || |||||||||||||||| |||||||| |||||||||||| |
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| T |
10351325 |
tgtaagttagaagtctcacattggctaaaaaagcggaggttgaacattttatacgtgaaatgacccataaactcattgtcttaaatatttttgggtaaaa |
10351226 |
T |
|
| Q |
225 |
gtgtgatgtccatctca |
241 |
Q |
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|||||||||| |||||| |
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| T |
10351225 |
gtgtgatgtctatctca |
10351209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 22028458 - 22028412
Alignment:
| Q |
188 |
gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc |
234 |
Q |
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| T |
22028458 |
gacccataaactcattgtcttaatgttttgggtaagagtgtggtgtc |
22028412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 32594807 - 32594761
Alignment:
| Q |
188 |
gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc |
234 |
Q |
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|||||||||||||| |||||||| ||||||||||| |||||| |||| |
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| T |
32594807 |
gacccataaactcattgtcttaaggttttgggtaagagtgtggtgtc |
32594761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 7192786 - 7192835
Alignment:
| Q |
192 |
cataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca |
241 |
Q |
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||||||||||||||||||| |||||| ||||| ||||||||||| |||| |
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| T |
7192786 |
cataaactcaatgtcttaaggttttgagtaaagatgtgatgtccaactca |
7192835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 21619136 - 21619095
Alignment:
| Q |
188 |
gacccataaactcaatgtcttaacgttttgggtaaaagtgtg |
229 |
Q |
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||||||||||| || |||||||| |||||||||||||||||| |
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| T |
21619136 |
gacccataaacccattgtcttaaggttttgggtaaaagtgtg |
21619095 |
T |
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