View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11180A_low_159 (Length: 244)
Name: NF11180A_low_159
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_159 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 32724718 - 32724922
Alignment:
| Q |
20 |
gaaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttattt |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32724718 |
gaaacatgagaagacaagaatgatagagagattatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacataagttattt |
32724817 |
T |
|
| Q |
120 |
gggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaacaaagtatggttcttatgtc |
219 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
32724818 |
gggttaacaggctttttagaaaggtgttgaaggtaatggatgttaaaagattctttctcagcatttcatggttcagagaaaaaagtatggttcttatgtc |
32724917 |
T |
|
| Q |
220 |
tagac |
224 |
Q |
| |
|
|||| |
|
|
| T |
32724918 |
aagac |
32724922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 32723264 - 32723441
Alignment:
| Q |
21 |
aaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttg |
120 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
32723264 |
aaacatgagaagacaggaaagatagagagatgatgggtttacaggtttagtagagaaacagtaatttttgttttatattaatggtgacacaagttatttg |
32723363 |
T |
|
| Q |
121 |
ggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcaga |
196 |
Q |
| |
|
|| |||| | |||| ||||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
32723364 |
agttataacatgtttttgagaaaggtgttgaaggtagtggatgttacaagattctttatcagcatttcatggttcaga |
32723441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 4001942 - 4002081
Alignment:
| Q |
85 |
tttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatt |
184 |
Q |
| |
|
||||| |||| |||||||||| || |||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4001942 |
ttttttttttttatcaatggtaacgcaagttatttgggttaacatgtttttgagaaagatgttgaaggtagtggatgttaaaagattctttctcataatt |
4002041 |
T |
|
| Q |
185 |
tcacggttcagagaacaaagtatggttcttatgtctagac |
224 |
Q |
| |
|
||| |||| |||||| ||||||||||||||||| |||||| |
|
|
| T |
4002042 |
tcatggtttagagaaaaaagtatggttcttatgcctagac |
4002081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 15719989 - 15720167
Alignment:
| Q |
21 |
aaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaa-tttttgttttgtatcaatggtgacacaagttattt |
119 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
15719989 |
aaacatgagaagacaagaaagatagagagatgatgggtgtacaggtttagtagagaaagagtaattttttgttttgtattaatggtgacacaagttattt |
15720088 |
T |
|
| Q |
120 |
gggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcaga |
196 |
Q |
| |
|
|||| |||| | |||| ||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
15720089 |
gggttataacaagtttttgagaaaggtgttgaaggtagtggatgttacaagattctttctcagtatttcatggttcaga |
15720167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University