View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11180A_low_16 (Length: 417)
Name: NF11180A_low_16
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_16 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 6318322 - 6317915
Alignment:
| Q |
11 |
gtgttagtttgttgccatttctgaactacagatgaattcaaaaaagcttgttagatt-----gttgcctgcatattcttagagtttaccattcataatcc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6318322 |
gtgttagtttgttgccatttctgaactacagatgaattcaaaaaagcttgttagattatattgttgcctgcatattcttagagtttaccattcataatcc |
6318223 |
T |
|
| Q |
106 |
ttgttgtacgtgcagctgttgatgacagtaaaattaaattctctccacatcatgaaactgacctacatacgtttgaatttaaggtcatatgtcactatac |
205 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6318222 |
ttgttgt----gcagctgttgatgacagtaaaattaaattctctccacatgatgaaactgacctacatacgtttgaatttaaggtcatatttcactatac |
6318127 |
T |
|
| Q |
206 |
tcccaaacttttatagcctcttggcattcaaacaagatatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgtacccctc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6318126 |
tcccaaacttttatagcctcttggcattcaaacaagatatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgaacccctc |
6318027 |
T |
|
| Q |
306 |
ttgttatgagtttttctctcgtctgcgatcaaccttttttggtactcttaacctccataactttgtccactcccctggttttctcaagtttacataaatc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6318026 |
ttgttatgagtttttctctcgtctgcgatcaaccttttttggtactcttaacctccataactttgtccactcccctggttttctcaagtttacataaatc |
6317927 |
T |
|
| Q |
406 |
atatgaccatat |
417 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6317926 |
atatgaccatat |
6317915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 246
Target Start/End: Complemental strand, 6315104 - 6314954
Alignment:
| Q |
92 |
accattcataatccttgttgtacgtgcagctgttgatgacagtaaaattaaattctctccacatcatgaaactgacc--tacatacgtttgaatttaagg |
189 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||||||||| |||||||| ||||| |||||| || || | ||| ||||||||||| ||| |
|
|
| T |
6315104 |
accattcataatcattgttgt----gcagttgttgatgacagtaaaaataaattctg--cacatgatgaaaatgtcccctgcatgcgtttgaatttgagg |
6315011 |
T |
|
| Q |
190 |
tcatatgtcactatactcccaaacttttatagcctcttggcattcaaacaagatatg |
246 |
Q |
| |
|
||||| || ||||| | || || || || ||| |||||| |||||||| |||||||| |
|
|
| T |
6315010 |
tcataggttactattcccctaagctgttgtagtctcttgccattcaaagaagatatg |
6314954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 55983990 - 55983907
Alignment:
| Q |
242 |
atatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgtacccctcttgttatgagtttttctctc |
325 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||||||| ||| |||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
55983990 |
atatgtcaatcactttcattttcctcttctctaaaaggacatgaaatttgacattgaacccctcgtcttatgagtttttctctc |
55983907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 377
Target Start/End: Complemental strand, 55983861 - 55983824
Alignment:
| Q |
340 |
ttttttggtactcttaacctccataactttgtccactc |
377 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55983861 |
ttttttggtactcttaacctccacaactttgtccactc |
55983824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University