View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_163 (Length: 242)
Name: NF11180A_low_163
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_163 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 27492130 - 27491926
Alignment:
| Q |
21 |
ataaatatcacacattaaaatataaatcactttatattcaatt-atttttaatggtactcaatttcaaaaagttaattcactcaaaacatttattatcac |
119 |
Q |
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| T |
27492130 |
ataaatatcacacattaaaacataaatcacttcatattaaattcatttttaatcgtactcaatttcaaaaagttaattcactcaaaacatttattatcac |
27492031 |
T |
|
| Q |
120 |
tagaaaatgaagcacacatcactctaagcacaaccaattttacaaaatgaattcattnnnnnnnttggtttgtgtcacatacataaccaaacacacacat |
219 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
27492030 |
tagaaaatgaagcacacatcactttaagcacaaccaattttacaaaatgaattcattaaaaaaattggtttgtgtcacatacat-accaaacacacacat |
27491932 |
T |
|
| Q |
220 |
gttcat |
225 |
Q |
| |
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| |||| |
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| T |
27491931 |
gctcat |
27491926 |
T |
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