View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_164 (Length: 241)
Name: NF11180A_low_164
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_164 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3036734 - 3036513
Alignment:
| Q |
1 |
ggacattcattctgatagtgtcccggctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaacgcc |
100 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3036734 |
ggacattcattctgatagtgtcccagcttgtgacacttataacactcaatagaatctttgttgattcttcccctaccctttcctctagcacctgaatgcc |
3036635 |
T |
|
| Q |
101 |
ctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgttc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036634 |
ctcttcctctaccatatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgttc |
3036535 |
T |
|
| Q |
201 |
ttgaacaagtaagctactctga |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
3036534 |
ttgaacaagtaagctactctga |
3036513 |
T |
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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 212
Target Start/End: Complemental strand, 16863423 - 16863270
Alignment:
| Q |
59 |
tgttgattcttcccctaccctttcctctagcacctgaacgccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttg |
158 |
Q |
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|||| |||||||| |||||| |||||||| |||||||||||||||||||||||||| |||| | |||||||||||| ||||| || ||||||||||||| |
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| T |
16863423 |
tgttaattcttcctctaccccttcctctaacacctgaacgccctcttcctctaccatatcctacagatcctcttccaccattagatgccttcaaagcttg |
16863324 |
T |
|
| Q |
159 |
ctcaatatcaatttcttgattctgagattttatgcgtcgttcttgaacaagtaa |
212 |
Q |
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| T |
16863323 |
ttcaatatcaatttcttgattttgagttttcatgcgttgttcttgaacaagtaa |
16863270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 20529013 - 20528888
Alignment:
| Q |
93 |
tgaacgccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatg |
192 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||| || |||||||| ||| |
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| T |
20529013 |
tgaacgccctcttcctctcccatatcccacagatcctcttccaccattagaaaccttcaaagcttgctcagtatcagtttcttggttttgagatttcatg |
20528914 |
T |
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| Q |
193 |
cgtcgttcttgaacaagtaagctact |
218 |
Q |
| |
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||| |||||||||||||||| ||||| |
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| T |
20528913 |
cgttgttcttgaacaagtaaactact |
20528888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 40612968 - 40613109
Alignment:
| Q |
80 |
ttcctctagcacctgaacgccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgatt |
179 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| | |||| | |||||| | ||||| ||||||||||||||||| |||| |||||| |||||||| |
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| T |
40612968 |
ttcctctagcacctgaacgtcctcttcctctaccataccccacgaaacctctttcaccattggaaaccttcaaagcttgttcaacatcaatgtcttgatt |
40613067 |
T |
|
| Q |
180 |
ctgagattttatgcgtcgttcttgaacaagtaagctactctg |
221 |
Q |
| |
|
|||||||| ||| || |||||||||||||||| |||||||| |
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| T |
40613068 |
ttgagatttcatgtgttgttcttgaacaagtaaactactctg |
40613109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 20542289 - 20542213
Alignment:
| Q |
145 |
accttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgttcttgaacaagtaagctactctg |
221 |
Q |
| |
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|||||||||||||| |||| ||||| ||||||||||||||||| |||||| |||||||||||||||| |||||||| |
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| T |
20542289 |
accttcaaagcttgttcaacatcaaagtcttgattctgagatttcatgcgttgttcttgaacaagtaaactactctg |
20542213 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20542409 - 20542323
Alignment:
| Q |
1 |
ggacattcattctgatagtgtcccggctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctcta |
87 |
Q |
| |
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||||| |||||||||||||||||| ||| ||||||||| ||||||||| | || ||||||||||||| || ||| |||||||| |
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| T |
20542409 |
ggacactcattctgatagtgtcccagcttgtgacacttgaaacactcaacacttgctttgttgattcttcctctgccccttcctcta |
20542323 |
T |
|
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