View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_166 (Length: 241)
Name: NF11180A_low_166
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_166 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 5831854 - 5832045
Alignment:
| Q |
29 |
gactgaaatgaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggcactttatactgattgatacttgcaccacg |
128 |
Q |
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| T |
5831854 |
gactaaaatgaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacg |
5831953 |
T |
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| Q |
129 |
cgatattgcataatccattagttcctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttcctt |
220 |
Q |
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| T |
5831954 |
cgatattgcataatccattagttcctcaaacgtgccatttttcaccacacgaatctctaatggcccaattgaattatcagcaactcttcctt |
5832045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 5824161 - 5823994
Alignment:
| Q |
53 |
tagagtcaagaagttccattataggagtgaaactcacgcacctaggcactttatactgattgatacttgcaccacgcgatattgcataatccattagttc |
152 |
Q |
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| T |
5824161 |
tagagtcaagaagttccactacaggtgtgagactcacgcacctaggaactttatattgattaatcgatgcaccacacgatatataataatccatcaaatc |
5824062 |
T |
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| Q |
153 |
ctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttcctt |
220 |
Q |
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| T |
5824061 |
ctcgaatgtgccatttttcaccacacgaatctctaatggcccaattgaattatcagcaactcttcctt |
5823994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 78938 - 78763
Alignment:
| Q |
37 |
tgaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggcactttatactgattgatacttgcaccacgcgatattg |
136 |
Q |
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| T |
78938 |
tgaacagagaccaccctagagtccaaaagctccattataggagtaaaattaacacaccttggaactttatattgatttattgaagcacctcttgagattg |
78839 |
T |
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| Q |
137 |
cataatccattagttcctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaac |
212 |
Q |
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| T |
78838 |
cataatccataagctcctcaaaagttccactcttcacaacccttatctccaatggtccaattgaatgatcagcaac |
78763 |
T |
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