View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_168 (Length: 240)
Name: NF11180A_low_168
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_168 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 40866236 - 40866414
Alignment:
| Q |
42 |
atagaaaagatcatcaaagtgcagaagggcctaactctttcaattacttgtgtgccaagccatgtacttcatattttcaattcagtacaactcaaaattt |
141 |
Q |
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| T |
40866236 |
atagataagatcatcaaagtgcagaagggcctaactcttccaattacttgtgtgccaagccatgtacttcatattttcaattcagtacaactcaaaattt |
40866335 |
T |
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| Q |
142 |
gatttaacctacctgttaggtgagcaaaggtcaaatgactctgataattaaatgtctctgcttgtctatgttggctaat |
220 |
Q |
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| T |
40866336 |
gatttaacctacctgttaggtgagcaaaggtcaaatgactctgataattaaatgtctctgcttgtctatgttggctaat |
40866414 |
T |
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