View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_176 (Length: 237)
Name: NF11180A_low_176
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_176 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 3019200 - 3019404
Alignment:
| Q |
13 |
ggacatcacaacaatagttttgaccacattggccacattagaccccaacataaaggtttgcagcgtaaagcaatcgcagtttaaagccatgtctgagatt |
112 |
Q |
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| T |
3019200 |
ggacatcacaacaatagttttgaccacattggccacattagaccccaacataaaggtttgcagcgtaaagcaatcgcagtttaaagccatgtctgagatt |
3019299 |
T |
|
| Q |
113 |
attaaaaaattaaccaattgtttatgactttacctaataagaatgtttttcgatgccgttccctcttcgcagtcggtcgcaatgtgttcattccttttct |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3019300 |
attaaaaaattaaccaattgtttatgaccttacctaataagaatgtttttcgatgccgttccctcttcgcagtcggtcgcaatgtgttcattccttttct |
3019399 |
T |
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| Q |
213 |
atgat |
217 |
Q |
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||||| |
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| T |
3019400 |
atgat |
3019404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 3009241 - 3009443
Alignment:
| Q |
14 |
gacatcacaacaatagttttgaccacattggccacattagaccccaacataaaggtttgcagcgtaaagcaatcgcagtttaaagccatgtctgagatta |
113 |
Q |
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||||||||||||||| ||| ||||| |||||| ||||| ||| |||||||| |||||||||| |||||| || || |||||| ||| |||||||| |
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| T |
3009241 |
gacatcacaacaataatttcgaccatattggcgacattttacctcaacataa-ggtttgcagcataaagcgattgcgatttaaaaccacagatgagatta |
3009339 |
T |
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| Q |
114 |
ttaaaaaattaaccaattgtttatgactttacctaataagaatgtttttcgatgccgttccctcttcgcagtcggtcgcaatgtgttcattccttttcta |
213 |
Q |
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| T |
3009340 |
ttcaaaaattaaccaatttttcatgcccttacctaataagaatgtttttcgatgcagctccctcttcgtggttggtcgcaatattctcattccttttcta |
3009439 |
T |
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| Q |
214 |
tgat |
217 |
Q |
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|||| |
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| T |
3009440 |
tgat |
3009443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 3034370 - 3034482
Alignment:
| Q |
105 |
ctgagattattaaaaaattaaccaattgtttatgactttacctaataagaatgtttttcgatgccgttccctcttcgcagtcggtcgcaatgtgttcatt |
204 |
Q |
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||||||||||||||| ||||||||||| | ||| | ||||||||||||||||||| |||||||||||||||||| || |||||||||||| |||||||| |
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| T |
3034370 |
ctgagattattaaaatattaaccaattcctcatgcccttacctaataagaatgtttgtcgatgccgttccctctttgcggtcggtcgcaatatgttcatt |
3034469 |
T |
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| Q |
205 |
ccttttctatgat |
217 |
Q |
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||||||||||||| |
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| T |
3034470 |
ccttttctatgat |
3034482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 20059890 - 20059780
Alignment:
| Q |
108 |
agattatt-aaaaaattaaccaattgtttatgactttacctaataagaatgtttttcgatgccgttccctcttcgcagtcggtcgcaatgtgttcattcc |
206 |
Q |
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|||||||| ||||||||||| |||| || ||| | |||||||||||||||||||| ||||| ||||||||||| || ||||||||||| | |||||||| |
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| T |
20059890 |
agattattgaaaaaattaacaaattcttcatgcccttacctaataagaatgttttccgatggcgttccctctttgcggtcggtcgcaaaatattcattcc |
20059791 |
T |
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| Q |
207 |
ttttctatgat |
217 |
Q |
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||||||||||| |
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| T |
20059790 |
ttttctatgat |
20059780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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