View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_178 (Length: 236)
Name: NF11180A_low_178
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_178 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 2442696 - 2442889
Alignment:
| Q |
24 |
gaccgaactctagcttctctttttgcaaccattttcagactatcttgctctgcatgcgatagaatgatacaaaatttctagaattgcattgtagaatggt |
123 |
Q |
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| T |
2442696 |
gaccgaactctagcttctctttttgcaaccattttcagactatcttgctctgcgtgcgatagaatgatacaaaatttgtataaattgattgtaaaatggt |
2442795 |
T |
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| Q |
124 |
aatatagaggagccctcgatcaatttctggtaaacagtgtcagtgagatgaacttgaaacaaaaacaaggttaacaaactcatatacaaatatt |
217 |
Q |
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| T |
2442796 |
aatataaagaagccctcgatcaatttctggtaaacagtgttagtgtgatgaacttgaaacaaaaacaaggttaacaaactcatatacaaatatt |
2442889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 50984328 - 50984196
Alignment:
| Q |
61 |
gactatcttgctctgcatgcgatagaatgatacaaaatttctagaattgcattgtagaatggtaatatagaggagccctcgatcaatttctggtaa--ac |
158 |
Q |
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| T |
50984328 |
gactatcttgctctgcatgtgacagattaaaacaaaatttgtagaattg-attgaa-aatggtaatatagagaagccctcaatcaatttctagaaaacac |
50984231 |
T |
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| Q |
159 |
agtgtcagtgagatgaacttgaaacaaaaacaagg |
193 |
Q |
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| T |
50984230 |
agtttcagtgagatgaagttgaaacaaaatcaagg |
50984196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 34019952 - 34019916
Alignment:
| Q |
37 |
cttctctttttgcaaccattttcagactatcttgctc |
73 |
Q |
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| T |
34019952 |
cttctctttttgcaaccattttcagactatcttgctc |
34019916 |
T |
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