View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11180A_low_179 (Length: 235)
Name: NF11180A_low_179
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_179 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 43139031 - 43138819
Alignment:
| Q |
6 |
tttggtgttaacaaggtatcatttgcacatgtaaagactaatacctcaagttttgtgagatctaaatggacaacaaactatcatttgagagtttgacatt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43139031 |
tttggtgttaacaaggtatcatttgcacatgtaaagactaatacctcaagttttgtgagatctaaatggacaacaaactatcatt-gagagtttgacatt |
43138933 |
T |
|
| Q |
106 |
taaaaaatgtaattttaatatgaatgagattgaatcagagacagcaaaatcagaaaatgttggcttattttaatgaatttatgatgataaaggtcatatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43138932 |
taaaaaatgtaattttaatatgaatgagattgaatcagagacagcaaaatcagaaaatgttggcttattttaatgaatttatgatgataaaggtcatatt |
43138833 |
T |
|
| Q |
206 |
ctattacgatgatg |
219 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
43138832 |
ctattacgatgatg |
43138819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 46060566 - 46060502
Alignment:
| Q |
35 |
tgtaaagactaatacctcaagttttgtgagatctaaatggacaacaaactatcatttgagagttt |
99 |
Q |
| |
|
|||| ||||||||| | ||||| || ||||| | ||||||||| ||||||||| ||||||||||| |
|
|
| T |
46060566 |
tgtagagactaatatcacaagtcttatgagacccaaatggacagcaaactatcctttgagagttt |
46060502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University