View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_181 (Length: 234)
Name: NF11180A_low_181
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_181 |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 10368784 - 10368617
Alignment:
| Q |
67 |
aggggtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtg |
166 |
Q |
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| T |
10368784 |
aggggtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagtacgggttgtg |
10368685 |
T |
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| Q |
167 |
atgaaggagatgatgaagaagtactgagatgaaggagaagaagtagaatggagttcaaagattcagat |
234 |
Q |
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| T |
10368684 |
atgaaggagatgatgaagaagaactgagatgaaggagaagaagaagaatggagttcaaagattcagat |
10368617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 10368871 - 10368838
Alignment:
| Q |
20 |
tactccacaattgttccttaagacacacacacgc |
53 |
Q |
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| T |
10368871 |
tactccacaattgttccttaagacacacacacgc |
10368838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 11659653 - 11659515
Alignment:
| Q |
71 |
gtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtgatga |
170 |
Q |
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| T |
11659653 |
gtgagatcgaaatgcaaacccataccttgaaatagtagcctccttcttgttcttgctgtccttttcaatatttagaccactgcaatgctggttgcaatga |
11659554 |
T |
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| Q |
171 |
aggagatgatgaagaagtactgagatgaaggagaagaag |
209 |
Q |
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| T |
11659553 |
aggagatgaagaagaagaactgccatgaagaaggagaag |
11659515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 11668822 - 11668684
Alignment:
| Q |
71 |
gtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtgatga |
170 |
Q |
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| T |
11668822 |
gtgagatcgaaatgcaaaccgataccttgaaatagtagcctccttcttctttttgctgtccttttcaatatttagaccactggagtgctggttgcaatga |
11668723 |
T |
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| Q |
171 |
aggagatgatgaagaagtactgagatgaaggagaagaag |
209 |
Q |
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| T |
11668722 |
aggagatgaagaagaagaactgcaatgaagaaggagaag |
11668684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 53239290 - 53239215
Alignment:
| Q |
101 |
aatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtgatgaaggaga |
176 |
Q |
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| T |
53239290 |
aatagtagcttctttcttcttcttgctgtccttttcaattttcagaccactgcagcgctggttgcaatgaaggaga |
53239215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 2170405 - 2170330
Alignment:
| Q |
101 |
aatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtgatgaaggaga |
176 |
Q |
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| T |
2170405 |
aatagtagcttctttcttcttcttgctgtccttttcaattttcagaccactgcagcgctggttgcaatgaaggaga |
2170330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 36116774 - 36116814
Alignment:
| Q |
194 |
gatgaaggagaagaagtagaatggagttcaaagattcagat |
234 |
Q |
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| T |
36116774 |
gatgaaggagaagaagaataatggagttcaaagattcagat |
36116814 |
T |
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