View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_19 (Length: 404)
Name: NF11180A_low_19
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 30811678 - 30811333
Alignment:
| Q |
8 |
ttggagttgtagtcgtcatgagagggcaataggaataggtcgtgttatgagtgtttttatctatatttctcttttgcatgcaccttaggattagtgcccg |
107 |
Q |
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| T |
30811678 |
ttggagttgtagtcgtcatgagagggcaataggaataggtcgtgttatgagtgtttttatctatatttctcttttgcatgcaccttaggattagtgccag |
30811579 |
T |
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| Q |
108 |
tacaaattgtaaaacggtgcttattggcataaccatagcccacaacaaaatacatgaatgtaggacatatcactaataaccttgctaagtaagtttgtca |
207 |
Q |
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| T |
30811578 |
tacaaattgtaaaacggtgcttattggcataaccatagcccacaacaaaatacatgaatgtaggacatatcactaataaccttgctaagtaagtttgtca |
30811479 |
T |
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| Q |
208 |
cattaattttggtcatcaaacttctattaggcttgtgcagctaattattttgaagtttggtaaccacaatcatgtaacaaggacatattttggaggaaat |
307 |
Q |
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| T |
30811478 |
cattaattttggtcatcaaacttctattaggcttgtgcagcttattattttgaagtttggtaatcacaatcatgtaacaaggacatattttggaggaaat |
30811379 |
T |
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| Q |
308 |
gttcactattcacaacctgtggccatcagactttattaggatatat |
353 |
Q |
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| T |
30811378 |
gttcactattcacaacctgtggccatcaaactttattaggatatat |
30811333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 30820477 - 30820329
Alignment:
| Q |
173 |
catatcactaataaccttgctaagtaagtttgtca--cattaattttggtcatcaaacttctattaggcttgtgcagctaattattttgaagtttggtaa |
270 |
Q |
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| T |
30820477 |
catatcactaataacctttctaagtatgtttgtcatacattgattgtggtcatcaaacttctattaggcttgtg-ggccctttattttgaagtatggtga |
30820379 |
T |
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| Q |
271 |
ccacaatcatgtaacaaggacatattttggaggaaatgttcactattcac |
320 |
Q |
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| T |
30820378 |
tcaaaatcatgtatgatggacatgtttgggaggaaatgttcacgattcac |
30820329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 297
Target Start/End: Complemental strand, 30815273 - 30815145
Alignment:
| Q |
171 |
gacatatcactaataaccttgctaagtaagtttgtca---cattaattttggtcatcaaacttctattaggcttgtgcagctaattattttgaagtttgg |
267 |
Q |
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| T |
30815273 |
gacatatcactaataaccttgctaagtctctttgtcataacattgattgtggtcatcaaacttctattaggcttgt-aagccatttattttgaagtatgg |
30815175 |
T |
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| Q |
268 |
taaccacaatcatgtaacaaggacatattt |
297 |
Q |
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| T |
30815174 |
tgatcaaaatcatgtatgatggacatattt |
30815145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 35375092 - 35375136
Alignment:
| Q |
54 |
atgagtgtttttatctatatttctct-tttgcatgcaccttagga |
97 |
Q |
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| T |
35375092 |
atgaatgtttttatgtatatttctctatttgcatgcaccttagga |
35375136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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