View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_2 (Length: 655)
Name: NF11180A_low_2
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 7 - 651
Target Start/End: Original strand, 36607801 - 36608445
Alignment:
| Q |
7 |
gtatataccatggtaaaccatttctcttgaattttaacaaactaagatacttaaatgtgggatcagaaagtttttctaacataattgcaattgctgtttt |
106 |
Q |
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| T |
36607801 |
gtatataccatggtaaaccatttctcttgaattttaacaaactaagatacttaaatgtaggatcagaaagtttttctaacataattgcaattgctgtttt |
36607900 |
T |
|
| Q |
107 |
gtgtaaaaacatctcaaatcacagacgagttaggaattcggttggagtcagttaaactaaacgcgacactgttatcaattgatggtttttacaattttgg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| |
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| T |
36607901 |
gtgtaaaaacatctcaaatcacagacgagttaggaattcggttggagtcagttaaactaaacgtgacaatgttatcagttgatggtttttacaattttgg |
36608000 |
T |
|
| Q |
207 |
taatgatacattgtgcaacgtaaatggcgag-agtcagatatacccgacaatgattctgttatgtcacatgaatgatgctatctaatgagcttcgttgta |
305 |
Q |
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| T |
36608001 |
taatgatacattgtgcaacgtaaatggcgaggagtcagatatacccgacaatgattctgttatgtcacatgactgatgctatctaatgagcttcgttgta |
36608100 |
T |
|
| Q |
306 |
ctgttgttttttc-actaatgttttgataatcacgtgtaatttaacatatagtttagaaacatttagaccgtttatttttatgtcagtttaattctatta |
404 |
Q |
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| T |
36608101 |
ctgttgttttttccactaatgttttaataatcacatgtaatttaacagatagtttagaaacatttagaccgtttatttttatgtcagtttatttctattt |
36608200 |
T |
|
| Q |
405 |
tgtattgaacattatttctttgtatgctattaaacctttaaacttcaatttgagattaagatttgcataactaattaatcagtgcatataatctatcatg |
504 |
Q |
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| T |
36608201 |
tgtattgaaccttagttctttgaatgctattaaaccttgaaacttcaatttgagattaggatttgcataactaattaatcaatgcatataatctattacg |
36608300 |
T |
|
| Q |
505 |
tgtttgattttacacatggtttctgtgtatgaagctttagttatgccattccatgatatgtctttttatatgcgagcacacacgaatacaccttagacca |
604 |
Q |
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|||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
36608301 |
tgtttgattttacacatggtttatgtatataaagctttagttatgccattccatgacatgtctttttatatgcgagcgcacacgaatacaccctagacca |
36608400 |
T |
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| Q |
605 |
atttagatgtatattaatattttcacagatatatagaataatctacc |
651 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
36608401 |
atttaggtgtatattaatattttcacagatatat--aataatctacc |
36608445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 590 - 626
Target Start/End: Original strand, 40966064 - 40966100
Alignment:
| Q |
590 |
atacaccttagaccaatttagatgtatattaatattt |
626 |
Q |
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| T |
40966064 |
atacaccttagaccaatttatatgtatattagtattt |
40966100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 357 - 516
Target Start/End: Original strand, 3006086 - 3006244
Alignment:
| Q |
357 |
tttagaaacatttagaccgtttatttttatgtcagtttaattctattatgtattgaacattatttctttgtatgctattaaacctttaaacttcaatttg |
456 |
Q |
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||||||||||||||||||||||||||||||||| ||||| || | || |||||||||| ||| || |||| ||| ||||||||||| ||| || | ||| |
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| T |
3006086 |
tttagaaacatttagaccgtttatttttatgtccgtttatttgtgttttgtattgaaccttagttgtttgaatgttattaaaccttgaaagttgca-ttg |
3006184 |
T |
|
| Q |
457 |
agattaagatttgcataactaattaatcagtgcatataatctatcatgtgtttgatttta |
516 |
Q |
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||||||| ||||||| ||||||| | || ||||||||| |||| ||||||||| ||||| |
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| T |
3006185 |
agattaacatttgcaaaactaatagaccaatgcatataagctattatgtgtttggtttta |
3006244 |
T |
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