View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11180A_low_203 (Length: 227)
Name: NF11180A_low_203
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_203 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 10597971 - 10598194
Alignment:
| Q |
4 |
ggagtgcttgatgatgacacggctacatttgaagggactaatacatctggaaatgtacaaagtgaagtacatgctgaaaacgaggtattcattgaagaac |
103 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10597971 |
ggagtgcttgatgaagacacggctacatttgaagggactaatacatctggaaatgtacaaagtgaagtacatgctgaaaacgaggtattcattgaagaac |
10598070 |
T |
|
| Q |
104 |
tcccagtcagagtgctcgatgaagacacggctatatctaaagagacaaatacctctgagactgaagtacaagccggaaatgaggtattcattgaagaact |
203 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10598071 |
tcccagtcggagtgctcgatgaagagacggctatatctaaagagacaaatacctctgagactgaagtacaagccggaaatgaggtattcattgaagaact |
10598170 |
T |
|
| Q |
204 |
tccagtcggagtgctcgatgaaga |
227 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10598171 |
tccagtcggagtgctcgatgaaga |
10598194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 66 - 203
Target Start/End: Original strand, 10598132 - 10598269
Alignment:
| Q |
66 |
tgaagtacatgctgaaaacgaggtattcattgaagaactcccagtcagagtgctcgatgaagacacggctatatctaaagagacaaatacctctgagact |
165 |
Q |
| |
|
||||||||| || | ||| |||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||| ||||||| ||||||||||| | | |
|
|
| T |
10598132 |
tgaagtacaagccggaaatgaggtattcattgaagaacttccagtcggagtgctcgatgaagacacagctacatctgaagagactaatacctctgaaaat |
10598231 |
T |
|
| Q |
166 |
gaagtacaagccggaaatgaggtattcattgaagaact |
203 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
10598232 |
gaagtacaagctggaaatgaggtattcattaaagaact |
10598269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 10598175 - 10598272
Alignment:
| Q |
1 |
gtcggagtgcttgatgatgacacggctacatttgaagggactaatacatctggaaatgtacaaagtgaagtacatgctgaaaacgaggtattcattgaag |
100 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||| ||||| ||||||||| |||| ||| ||||||||| |||| ||| |||||||||||| ||| |
|
|
| T |
10598175 |
gtcggagtgctcgatgaagacacagctacatctgaagagactaatacctctg---------aaaatgaagtacaagctggaaatgaggtattcattaaag |
10598265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 53388597 - 53388823
Alignment:
| Q |
1 |
gtcggagtgcttgatgatgacacggctacatttgaagggactaatacatctggaaatgtacaaagtgaagtacatgctgaaaacgaggtattcattgaag |
100 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||| || ||||||||||||||||||||||| |
|
|
| T |
53388597 |
gtcggagtgctcgatgaatacacggctacatttgaagagactaatacatctgaaaatgtactaagtgaagtaagtgatgaaaacgaggtattcattgaag |
53388696 |
T |
|
| Q |
101 |
aactcccagtcagagtgctcgatgaagacacggctatatctaaagagacaaatacctctgagactgaagtacaagccggaaatgaggtattcattgaaga |
200 |
Q |
| |
|
|||| || || |||| |||||||||||| ||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53388697 |
aacttcccgttggagtaatcgatgaagacaaggctacatctgaagagactaatacatctgagactgaagtacaagccggaaatgaggtattcattgaaga |
53388796 |
T |
|
| Q |
201 |
acttccagtcggagtgctcgatgaaga |
227 |
Q |
| |
|
||| ||||| ||||||||||||||||| |
|
|
| T |
53388797 |
actcccagttggagtgctcgatgaaga |
53388823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 53388761 - 53388890
Alignment:
| Q |
66 |
tgaagtacatgctgaaaacgaggtattcattgaagaactcccagtcagagtgctcgatgaagacacggctatatctaaagagacaaatacctctgagact |
165 |
Q |
| |
|
||||||||| || | ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| || |||| |||||||||| | | |
|
|
| T |
53388761 |
tgaagtacaagccggaaatgaggtattcattgaagaactcccagttggagtgctcgatgaagacacaactacatctgaaaagactaatacctctgtaaat |
53388860 |
T |
|
| Q |
166 |
gaagtacaagccggaaatgaggtattcatt |
195 |
Q |
| |
|
|| ||||||||| ||||||||||| ||||| |
|
|
| T |
53388861 |
gacgtacaagccagaaatgaggtactcatt |
53388890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University