View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_208 (Length: 224)
Name: NF11180A_low_208
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_208 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 26958777 - 26958965
Alignment:
| Q |
15 |
aacctgtgaagagaatgataatgaggacagtgataagccaaaaagggaaaacaacactgagagtaacaccaacagtaatcccaagcataagcattggctg |
114 |
Q |
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| T |
26958777 |
aacctatgaagagaatgataatgaggacagtgataagccaaaaagggaaaacaacactgagagtaacaccaacagtaatcccaagcataagcattggctg |
26958876 |
T |
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| Q |
115 |
aaacaaaagagccaaatcatagtctaatattggcacttgttttgttggatgagccactctcaaattataccaaactgatgatgctgatg |
203 |
Q |
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| T |
26958877 |
aaacaaaagagccaaatcatagtctaatattggcacttgttttgttggatgagccactctcaaattataccaaactgatgatgctgatg |
26958965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 41775544 - 41775393
Alignment:
| Q |
15 |
aacctgtgaagagaatgataatgaggacagtgataagccaaaaagggaaaacaacactgagagtaacaccaacagtaatcccaagcataagcattggctg |
114 |
Q |
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| T |
41775544 |
aacctatgaagagaataatgataaggacagtgatgagccagtaagggaaaacaacactaagagcaacaccaacagtgataccaagcataagcataggttg |
41775445 |
T |
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| Q |
115 |
aaacaaaagagccaaatcatagtctaatattggcacttgttttgttggatga |
166 |
Q |
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| T |
41775444 |
aaaaagaagagctagatcataatccaatattggaacatcttttgttggatga |
41775393 |
T |
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