View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11180A_low_209 (Length: 223)

Name: NF11180A_low_209
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11180A_low_209
NF11180A_low_209
[»] chr3 (2 HSPs)
chr3 (22-94)||(10368474-10368546)
chr3 (156-207)||(10368608-10368659)
[»] chr5 (1 HSPs)
chr5 (165-205)||(36116774-36116814)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 10368474 - 10368546
Alignment:
Q  22 ctttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368474 ctttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg 10368546  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 10368608 - 10368659
Alignment:
Q  156 agaaaacaaatctgaatctttgaactccattcttcttcttctccttcatctc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368608 agaaaacaaatctgaatctttgaactccattcttcttcttctccttcatctc 10368659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 36116814 - 36116774
Alignment:
Q  165 atctgaatctttgaactccattcttcttcttctccttcatc 205  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  36116814 atctgaatctttgaactccattattcttcttctccttcatc 36116774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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