View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_21 (Length: 394)
Name: NF11180A_low_21
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 338
Target Start/End: Original strand, 32210281 - 32210610
Alignment:
| Q |
12 |
gagatggcgtctttaaaatgacataatttaaaatctatttttattatttcatatgatttcataaatattacta---aagggaggattatcgatttaaaat |
108 |
Q |
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| T |
32210281 |
gagatggcgtctttaaaatgacataatttaaaatccatttttattatttcat--gatttcataaatattactactaaagggaggattatcgatttaaaat |
32210378 |
T |
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| Q |
109 |
ccaaaatgtgaaagcaatgaattctacattttgataaatgggccacatgagatcaattaa-tttctgaacctccataacatacatgacaagtgttatcca |
207 |
Q |
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| T |
32210379 |
ccaaaatgtgaaagcaatgaattctacattttgataaatgggccacatgagatcaattaaatttctgaacctccataacatacatgacaagtgttatcca |
32210478 |
T |
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| Q |
208 |
tgtgacatgttattgcgttcaagcaactaattgatttgaatgacagcaaca-nnnnnnnaattttgtactattataggatgattgaaaatgaaagttcta |
306 |
Q |
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| T |
32210479 |
tgtgacatgttattgcgttcaagcaactaattgatttgaatgacagcaacattttttttaattttgtactattataggatgattgaaaatgaaagttcta |
32210578 |
T |
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| Q |
307 |
ttgtaagctaattgctttcatgtggctaaaaa |
338 |
Q |
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| T |
32210579 |
ttctaagctaattgctttcatgtggctaaaaa |
32210610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 32210606 - 32210644
Alignment:
| Q |
350 |
aaaaatgctggatccctcgagttagtattatacatgtcc |
388 |
Q |
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| T |
32210606 |
aaaaatgctggatccctcgagttagtattatacatgtcc |
32210644 |
T |
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