View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11180A_low_220 (Length: 214)
Name: NF11180A_low_220
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_220 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 6111322 - 6111149
Alignment:
| Q |
27 |
gagtttggtgttccattttccttccttgtaggtagcagcagtatttcgcaagtctctaaggcttactcacgaagcgcgaaaacaatttgcatctggaaaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6111322 |
gagtttggtgttccattttccttccttgtaggtagcagcagtatttcgcaagtctctaaggcttactcacgaagcgcgaaaacaatttgcatctggaaaa |
6111223 |
T |
|
| Q |
127 |
ataaccaacttgatgactactgatgctgagtcacttcaggtatggttttcctttcctccctatcatctgatgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6111222 |
ataaccaacttgatgactactgatgctgagtcacttcaggtatggttttcctttcctccctatcatctgatgtc |
6111149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University