View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_221 (Length: 212)
Name: NF11180A_low_221
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_221 |
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Alignment Details
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 23609572 - 23609654
Alignment:
| Q |
20 |
aaaatatcctccactatttcgatgtattttctgaaatatataggccaacaaacttctagctttgatcatacatacacacacac |
102 |
Q |
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| T |
23609572 |
aaaatatcctccactatttcgatgtattttctgaaatatattggccaacaaacttctagctttgatcatacatacacacacac |
23609654 |
T |
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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 23609726 - 23609794
Alignment:
| Q |
117 |
aaagacgacatacttttattacactgtctacatcctcctcgtcatcctctttaaaataatagtgaccca |
185 |
Q |
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| T |
23609726 |
aaagacaacataattttattacactgtctacatcttcctcgtcatcctttttaaaataatagtgaccca |
23609794 |
T |
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Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 23609295 - 23609218
Alignment:
| Q |
25 |
atcctccactatttcgatgtattttctgaaatatataggccaacaaacttctagctttgatcatacatacacacacac |
102 |
Q |
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| T |
23609295 |
atcctccactatttctatgtattttctgaaatatattggctaaccgacttctagctttgatcatatgtacacacacac |
23609218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 23623031 - 23623096
Alignment:
| Q |
20 |
aaaatatcctccactatttcgatgtattttctgaaatatataggccaacaaacttctagctttgatc |
86 |
Q |
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| T |
23623031 |
aaaaaatcatccactatttcgatgtattttctgaaatatatatg-caccagacttctagctttgatc |
23623096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 23622748 - 23622673
Alignment:
| Q |
25 |
atcctccactatttcgatgtattttctgaaatatataggccaacaaacttctagctttgatcatacatacacacaca |
101 |
Q |
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| T |
23622748 |
atcctccactatt-ctatgtatattctgaaatatattggccaacatacttcttgctataatcatacgtacacacaca |
23622673 |
T |
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