View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_229 (Length: 204)
Name: NF11180A_low_229
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_229 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 26958819 - 26958965
Alignment:
| Q |
37 |
aagggaaaacaacactgagagtaacaccaacagtaatcccaagcataagcattggctgaaacaaaagagccaaatcatagtctaatattggcacttgttt |
136 |
Q |
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| T |
26958819 |
aagggaaaacaacactgagagtaacaccaacagtaatcccaagcataagcattggctgaaacaaaagagccaaatcatagtctaatattggcacttgttt |
26958918 |
T |
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| Q |
137 |
tgttggatgagccactctcaaattataccaaactgatgatgctgatg |
183 |
Q |
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| T |
26958919 |
tgttggatgagccactctcaaattataccaaactgatgatgctgatg |
26958965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 41775502 - 41775393
Alignment:
| Q |
37 |
aagggaaaacaacactgagagtaacaccaacagtaatcccaagcataagcattggctgaaacaaaagagccaaatcatagtctaatattggcacttgttt |
136 |
Q |
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|||||||||||||||| |||| |||||||||||| || |||||||||||||| || ||||| | |||||| | |||||| || |||||||| || | ||| |
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| T |
41775502 |
aagggaaaacaacactaagagcaacaccaacagtgataccaagcataagcataggttgaaaaagaagagctagatcataatccaatattggaacatcttt |
41775403 |
T |
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| Q |
137 |
tgttggatga |
146 |
Q |
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|||||||||| |
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| T |
41775402 |
tgttggatga |
41775393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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