View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_230 (Length: 204)
Name: NF11180A_low_230
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_230 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 21205725 - 21205559
Alignment:
| Q |
17 |
ttgttttgtccaaagaaatgggattgaagaagtgctgtagttggcattgtgaaagatacattgttcactgatgccacaaacattgctccattgagtccct |
116 |
Q |
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| T |
21205725 |
ttgttttgtccaaagaaatgggattgaagaagtgctgtagttggcattgtgaaagatacattgttcattgatgccacaaacattgttccattgagtccct |
21205626 |
T |
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| Q |
117 |
gacaagtttggttgctttgacaagggttagtaccaatgcctactgtgaagaaaaagtgtttatcgat |
183 |
Q |
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| T |
21205625 |
gacaagtttggttgctttgacaagggttagtaccaatgcctactgtgaagaaaaagtgtttatcgat |
21205559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 21183246 - 21183088
Alignment:
| Q |
22 |
ttgtccaaagaaatgggattgaagaagtgctgtagttggcattgtgaaagatacattgttcactgatgccacaaacattgctccattgagtccctgacaa |
121 |
Q |
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| T |
21183246 |
ttgtccagtgaagtgggattgaagaagtgcagtggttggcattgtgaaagatacattgttcactgatgctgcaaacattgttccattgggtccctgacat |
21183147 |
T |
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| Q |
122 |
gtttggttgctttgacaagggttagtaccaatgcctactgtgaagaaaaagtgtttatc |
180 |
Q |
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| T |
21183146 |
gtttggttgctttgacaagggttcgtaccaaggcctactgtgaagaaaaagtgtttatc |
21183088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 21853955 - 21853789
Alignment:
| Q |
17 |
ttgttttgtccaaagaaatgggattgaagaagtgctgtagttggcattgtgaaagatacattgttcactgatgccacaaacattgctccattgagtccct |
116 |
Q |
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| T |
21853955 |
ttgttttgtccaaagaaatgtgtctgaagaagtgctgtggttggcattatgaaagaaacattgttcaccgatgccgcaaacattgttccattaggtcctt |
21853856 |
T |
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| Q |
117 |
gacaagtttgg---ttgctttgacaagggttagtaccaatgcctactgtgaagaaaaagtgtttatc |
180 |
Q |
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|||| |||||| ||| |||| ||||| || ||||||| |||||||||||||||||||| ||||| |
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| T |
21853855 |
gacatgtttggttcttgttttggcaaggatttgtaccaagacctactgtgaagaaaaagtgcttatc |
21853789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 14156140 - 14156259
Alignment:
| Q |
22 |
ttgtccaaagaaatgggattgaagaagtgctgtagttggcattgtgaaagatacattgttcactgatgccacaaacattgctccattgagtccctgacaa |
121 |
Q |
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| T |
14156140 |
ttgtccaaagaaatgagattgaagaagtgttgtgtttgagagtgagaatgatacattgtttactgatgctgcaatcattgttccactgggttcctgagaa |
14156239 |
T |
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| Q |
122 |
gtttggttgctttgacaagg |
141 |
Q |
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| T |
14156240 |
gtttggttgttctgacaagg |
14156259 |
T |
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