View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_27 (Length: 373)
Name: NF11180A_low_27
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 47886799 - 47887171
Alignment:
| Q |
1 |
aacacggggtgaacctgttccaacgctcaaagtacaattaccaagaggagaccacccgttagtgccattgtccagattgctgttctcgattatattaaca |
100 |
Q |
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| T |
47886799 |
aacacggggtgaacctgttccgacgctcaaagtacaattaccaagaggagaccacccgttagtgccattgtccagattgctgttctcgattatattaaca |
47886898 |
T |
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| Q |
101 |
ccaaaagcaacattctgcaatacaataacaattttcaaatgcttgaagcatacagaatcgaccacacaacaaaaggcatcatagaaacaattaagtgttt |
200 |
Q |
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| T |
47886899 |
ccaaaagcaacattctgcaatacaataacaattttcaaatgcttgaagcatacagaatcgaccacacaacaaaaggcatcatagaaacaattaagtgttt |
47886998 |
T |
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| Q |
201 |
gagtaacaatgaatgtgtaaagagaaattaaagtaatctgcagaaaatatgatgaaagcctaacctcaaaatccgggggtgtcgaaggtggtgatttagc |
300 |
Q |
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| T |
47886999 |
gagtaacaatgaatgtgtaaagagaaattaaagtaatctgcagaaaatatgatgaaagcctaacctcaaaatccgggggtgtcgaaggtggtgatttagc |
47887098 |
T |
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| Q |
301 |
tgcatactttataacaaaagtatttagaagaatgtcagtgcctccaggggggccttccaaataaacaactact |
373 |
Q |
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| T |
47887099 |
tgcatgctttataacaaaagtatttagaagaatgtcagtgcctccaggggggccttccaaataaacaactact |
47887171 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 4622361 - 4622318
Alignment:
| Q |
74 |
agattgctgttctcgattatattaacaccaaaagcaacattctg |
117 |
Q |
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| T |
4622361 |
agattgctgttctcaattatattaactccaaaagcaacattctg |
4622318 |
T |
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