View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11180A_low_29 (Length: 368)

Name: NF11180A_low_29
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11180A_low_29
NF11180A_low_29
[»] chr4 (3 HSPs)
chr4 (13-342)||(20823315-20823645)
chr4 (112-208)||(37090483-37090579)
chr4 (111-140)||(37433776-37433805)
[»] chr2 (3 HSPs)
chr2 (111-208)||(3389263-3389360)
chr2 (163-213)||(27494914-27494964)
chr2 (111-207)||(30977573-30977669)
[»] chr1 (3 HSPs)
chr1 (111-203)||(38639268-38639356)
chr1 (168-207)||(2752448-2752487)
chr1 (112-188)||(24248824-24248900)
[»] chr3 (3 HSPs)
chr3 (111-210)||(32899685-32899783)
chr3 (168-207)||(21121760-21121799)
chr3 (234-274)||(29217647-29217687)
[»] chr5 (2 HSPs)
chr5 (112-160)||(10601645-10601693)
chr5 (234-281)||(29166484-29166531)
[»] scaffold0285 (2 HSPs)
scaffold0285 (153-208)||(13193-13248)
scaffold0285 (112-150)||(14008-14046)
[»] chr7 (2 HSPs)
chr7 (169-207)||(36478662-36478700)
chr7 (123-208)||(19531830-19531915)
[»] chr6 (1 HSPs)
chr6 (168-208)||(34631309-34631349)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 20823645 - 20823315
Alignment:
Q  13 tagataaataatagagctaaaatttcttacacgaccatttggatctttactactctcttcgttcttttcatagaattagtttataaaaattacgggtcgt 112  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||  ||| ||    
T  20823645 tagataaataatatagctaaaatttcttacacgaccatttggatctttactactctcttcgtccttttcatagaattaatttataaaaattatcggttgt 20823546  T
Q  113 tgaagtaataaatttgtcacaaatgtatatatgttttattaaattgtctcttgtatatagatatatttaatgttaagtttttatatttcaagatacgtga 212  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  20823545 tgaagtaataaatttgtcacaaatgtatgtatgttttactaaattgtctcttgtatatagatagatttaatgttaagtttttatatttcaagatatgtga 20823446  T
Q  213 agggtacattggaaaaaataataataaacacatctacaaatttttagatagtcttatatttagagacaa-tannnnnnnnaaatagtcttataactatag 311  Q
     |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |         ||||| |||||||| || ||    
T  20823445 ggggtacgttggaaaaaataataataaatacatctacaaatttttagatagtcttatatttagagacaatttttttttttaaataatcttataattagag 20823346  T
Q  312 acggatggtgtaagattttgttttacttctg 342  Q
    |||||||| ||||||||||||||||||||||    
T  20823345 acggatggagtaagattttgttttacttctg 20823315  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 37090483 - 37090579
Alignment:
Q  112 ttgaagtaataaatttgtcacaaatgtatatatgttttattaaattgtctcttgtatatagatatatttaatgttaagtttttatatttcaagatac 208  Q
    ||||||| ||||||||||||||||| ||  |   | |||||||||||||  |||| |||| ||||||||||| |||| ||||||||||| |||||||    
T  37090483 ttgaagttataaatttgtcacaaatttaagtgactattattaaattgtcctttgtgtataaatatatttaatattaaatttttatattttaagatac 37090579  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 37433805 - 37433776
Alignment:
Q  111 gttgaagtaataaatttgtcacaaatgtat 140  Q
    ||||||||||||||||||||||||||||||    
T  37433805 gttgaagtaataaatttgtcacaaatgtat 37433776  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 3389263 - 3389360
Alignment:
Q  111 gttgaagtaataaatttgtcacaaatgtatatatgttttattaaattgtctcttgtatatagatatatttaatgttaagtttttatatttcaagatac 208  Q
    ||||||||| |||||||||||||||||||| |||||||||  ||||||||  |||  ||||||||||||||||||||  |||| ||||||||||||||    
T  3389263 gttgaagtagtaaatttgtcacaaatgtatgtatgttttaccaaattgtcctttgagtatagatatatttaatgttagtttttcatatttcaagatac 3389360  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 27494914 - 27494964
Alignment:
Q  163 ttgtatatagatatatttaatgttaagtttttatatttcaagatacgtgaa 213  Q
    ||||||||| |||||||||||||||| |||| |||||||||||||| ||||    
T  27494914 ttgtatataaatatatttaatgttaatttttcatatttcaagatacatgaa 27494964  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 30977669 - 30977573
Alignment:
Q  111 gttgaagtaataaatttgtcacaaatgtatatatgttttattaaattgtctcttgtatatagatatatttaatgttaagtttttatatttcaagata 207  Q
    |||| ||| ||||| ||||||||||| ||| | | | |||| ||||||||  |||| |||||||||||||||| |||| ||||  ||||||||||||    
T  30977669 gttgtagtcataaagttgtcacaaatatatgtgtctattatcaaattgtcctttgtgtatagatatatttaatattaacttttcgtatttcaagata 30977573  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 38639268 - 38639356
Alignment:
Q  111 gttgaagtaataaatttgtcacaaatgtatatatgttttattaaattgtctcttgtatatagatatatttaatgttaagtttttatatttcaa 203  Q
    |||||||||||||||||||||||||||    |||||||| | ||||||||  |||| |||||||| |||||||||||| |||| |||| ||||    
T  38639268 gttgaagtaataaatttgtcacaaatg----tatgttttgtcaaattgtcatttgtgtatagatacatttaatgttaacttttcatatctcaa 38639356  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 2752448 - 2752487
Alignment:
Q  168 tatagatatatttaatgttaagtttttatatttcaagata 207  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  2752448 tatagatatattcaatgttaattttttatatttcaagata 2752487  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 24248900 - 24248824
Alignment:
Q  112 ttgaagtaataaatttgtcacaaatgtatatatgttttattaaattgtctcttgtatatagatatatttaatgttaa 188  Q
    |||||||||||||||||||| |||| ||| |   | |||| ||||| ||| |||| |||||| ||||||||||||||    
T  24248900 ttgaagtaataaatttgtcataaatatatgttaatattatcaaattatcttttgtttatagagatatttaatgttaa 24248824  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 32899685 - 32899783
Alignment:
Q  111 gttgaagtaataaatttgtcacaaatgtatatatgttttattaaattgtctcttgtatatagatatatttaatgttaagtttttatatttcaagatacgt 210  Q
    |||||||||||||||||||||||||||| | |||| ||||  |||||||   ||| |||| ||||||||||| | ||| ||||  |||||||||||||||    
T  32899685 gttgaagtaataaatttgtcacaaatgtgtgtatggtttaccaaattgttcattggatatggatatatttaa-ggtaacttttcgtatttcaagatacgt 32899783  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 21121760 - 21121799
Alignment:
Q  168 tatagatatatttaatgttaagtttttatatttcaagata 207  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  21121760 tatagatatatttaatgttaatttttcatatttcaagata 21121799  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 29217647 - 29217687
Alignment:
Q  234 taataaacacatctacaaatttttagatagtcttatattta 274  Q
    ||||||| ||||||| |||||| ||||||||||||||||||    
T  29217647 taataaatacatctagaaatttgtagatagtcttatattta 29217687  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 10601693 - 10601645
Alignment:
Q  112 ttgaagtaataaatttgtcacaaatgtatatatgttttattaaattgtc 160  Q
    ||||| |||||||||||| |||||||| | |||||||||||||||||||    
T  10601693 ttgaaataataaatttgttacaaatgtgtttatgttttattaaattgtc 10601645  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 29166484 - 29166531
Alignment:
Q  234 taataaacacatctacaaatttttagatagtcttatatttagagacaa 281  Q
    ||||||||||||||| |||||| |||||| ||||||||||| ||||||    
T  29166484 taataaacacatctaaaaatttgtagataatcttatatttaaagacaa 29166531  T

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Target: scaffold0285 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 13248 - 13193
Alignment:
Q  153 aaattgtctcttgtatatagatatatttaatgttaagtttttatatttcaagatac 208  Q
    |||||||||||||| |||  ||||||| |||||||| |||| ||||||||||||||    
T  13248 aaattgtctcttgtgtattaatatattcaatgttaacttttcatatttcaagatac 13193  T

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Target: scaffold0285; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 14046 - 14008
Alignment:
Q  112 ttgaagtaataaatttgtcacaaatgtatatatgtttta 150  Q
    |||||||||||||||||||||||||| || |||||||||    
T  14046 ttgaagtaataaatttgtcacaaatgcatgtatgtttta 14008  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 36478662 - 36478700
Alignment:
Q  169 atagatatatttaatgttaagtttttatatttcaagata 207  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  36478662 atagatatatttaatgttaacttttcatatttcaagata 36478700  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 19531915 - 19531830
Alignment:
Q  123 aatttgtcacaaatgtatatatgttttattaaattgtctcttgtatatagatatatttaatgttaagtttttatatttcaagatac 208  Q
    ||||||||||||||| |  |||||||||  |||||||   |||| ||||||| ||||||||| ||  |||| ||||||||||||||    
T  19531915 aatttgtcacaaatgcaagtatgttttaccaaattgtactttgtctatagatgtatttaatgctatcttttcatatttcaagatac 19531830  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 34631349 - 34631309
Alignment:
Q  168 tatagatatatttaatgttaagtttttatatttcaagatac 208  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  34631349 tatagatatattcaatgttaagttttcatattccaagatac 34631309  T

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