View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_30 (Length: 364)
Name: NF11180A_low_30
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_30 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 2 - 364
Target Start/End: Original strand, 404085 - 404447
Alignment:
| Q |
2 |
tctctccaagagatggaacattcgtcctctatggcctttcgttcccgttatagacttcagcttttcaaccatattttttcctccatgtttcttgagcgag |
101 |
Q |
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| T |
404085 |
tctctccaagagatggaacattcgtcccctatggcctttcgttcccgttatagacttcagcgtttcaaccatattttttcctccatttttcttgagcgag |
404184 |
T |
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| Q |
102 |
aactcgttggttttcattccatcaacagtttcttcctcgacattgaatacgattcatttcaaattcctcaacaaatggatcaactatatatgctgataat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
404185 |
aactcgttggttttcattccatcaacagtttcttcctcgacattgaatacaattcatttcaaattcctcaacaaatggttcaactatatatgctgttaat |
404284 |
T |
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| Q |
202 |
gtatctctctattcatgctatcaatacttgggagcctagacgagctcactttcctaccaacattctgcgttgtacaacccttgttaatctcaagctttgt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
404285 |
gtatctctctattcatgctatcaatacttgggagcctagacgagctcactttcctaccaacattctgcgttgtacaacccttgttaatctcaagctttgt |
404384 |
T |
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| Q |
302 |
cacttatctgtggacacacattttccttttacattgccctcacttaaaacacttctagctgga |
364 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
404385 |
cacttatctgtggacacaaattttccttttacattgccctcacttaaaacacttctagctgga |
404447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 975497 - 975456
Alignment:
| Q |
115 |
tcattccatcaacagtttcttcctcgacattgaatacgattc |
156 |
Q |
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| T |
975497 |
tcattccatcaacactttcatccttgacattgaatacgattc |
975456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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