View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_38 (Length: 353)
Name: NF11180A_low_38
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 55 - 333
Target Start/End: Original strand, 32524677 - 32524959
Alignment:
| Q |
55 |
agttaatttttcattatgaaaaacaatgctaaatatagtaggaatatattgtcgtagaatagatatgaaggatgtgtgtacgttaataactaactattct |
154 |
Q |
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| T |
32524677 |
agttaattttccattatgaaaaacaatgctaaatatagtaggaatatattgtcgtagaatagatatgaaggatgtgtgtacgttaataactaactattct |
32524776 |
T |
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| Q |
155 |
cctaatccatttctactttca--ttttgttaacttccatttaaagaccctttaacgannnnnnnnnnnnnnnnnnnngtaaaattaagtaactacccact |
252 |
Q |
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| T |
32524777 |
cctaatccatttctactttcattttttgttaacttccatttaaagaccctttaacgattttttctcctttttgttttgtaaaattaagtaactacccact |
32524876 |
T |
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| Q |
253 |
aactc--ataaaaaatgcacgttaaggcataaccaacttctttgtattgattgtagttaccaaaaataaagcttcttcgtatt |
333 |
Q |
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| T |
32524877 |
atctcatataaaaaatgcacgttaaggcataaccaacttctttgtattgattgtagttaccaaaaataaaacttcttcgtatt |
32524959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 32524599 - 32524666
Alignment:
| Q |
4 |
tttggtgttagatatgaagctgatttttcggaagtaccctttgcgtgtgttagttaatttttcattat |
71 |
Q |
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| T |
32524599 |
tttggagttagatatgaacctgatttttcggaagtaccctttgcgtgtgttagttaatttttcattat |
32524666 |
T |
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