View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11180A_low_41 (Length: 348)
Name: NF11180A_low_41
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 29056196 - 29056523
Alignment:
| Q |
1 |
acaaccacttcatcagtaggcgtttggatcttactccactcaacatactgtgcttctctacttcgatcaatgacccatgcattgaaaaaacaatcatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29056196 |
acaaccacttcatcagtaggcgtttggatcttactccactcaacatgctgtgcttctccacttcgatcaatgacccatgcattgaaaaaacaatcatgaa |
29056295 |
T |
|
| Q |
101 |
accaataacaaatataaagagcctgtttttacggcatattttgtaaaaaacaataatgaaaccaacaacaaatataaagagcctgtttgttacagcttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29056296 |
accaataacaaatataaagagcctgtttttacggcatattttgtaaaaaacaataatgaaaccaacaacaaatataaagagcctgtttgttacagcttat |
29056395 |
T |
|
| Q |
201 |
attgtacaaaatcacttttcaaaattttcatccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29056396 |
attgtacaaaatcacttttcaaaattttcatccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaac |
29056495 |
T |
|
| Q |
301 |
tgtttcaagtagcttctgagaataatct |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
29056496 |
tgtttcaagtagcttctgagaataatct |
29056523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 2811322 - 2811253
Alignment:
| Q |
225 |
ttttcatccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatg |
294 |
Q |
| |
|
|||||||| |||||| || ||||||| |||| |||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
2811322 |
ttttcatctgtttgttacaaattcttaaaaaattgagaatctgaaaataatctaaaaactgtttcaaatg |
2811253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 21479629 - 21479534
Alignment:
| Q |
210 |
aatcacttttcaaaatttt-catccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtt |
304 |
Q |
| |
|
|||||||||| | |||||| |||||||||||| ||| || ||| |||||| ||||||| |||| ||| |||||| | |||||||||||| ||||| |
|
|
| T |
21479629 |
aatcacttttaagaattttgcatccatttgttacagctttttaaaaaaatcagaatctaaaaaaaatctaaaaacagcttcaaatgagaagctgtt |
21479534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 42429792 - 42429723
Alignment:
| Q |
235 |
tttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtt |
304 |
Q |
| |
|
|||||| ||| || ||| |||||| ||||||| |||||||| |||||| |||||||||||||| ||||| |
|
|
| T |
42429792 |
tttgttacagctttttaaaaaaatcagaatctaaaaataatctaaaaacagtttcaaatgagaagctgtt |
42429723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University