View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11180A_low_43 (Length: 347)

Name: NF11180A_low_43
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11180A_low_43
NF11180A_low_43
[»] chr4 (4 HSPs)
chr4 (148-325)||(45760457-45760634)
chr4 (138-229)||(25062354-25062445)
chr4 (137-184)||(55897585-55897632)
chr4 (137-182)||(20512823-20512868)
[»] chr2 (3 HSPs)
chr2 (138-229)||(28282685-28282776)
chr2 (138-288)||(16576283-16576431)
chr2 (138-184)||(13712744-13712790)
[»] chr7 (2 HSPs)
chr7 (138-178)||(34891400-34891440)
chr7 (138-182)||(34891568-34891612)
[»] chr3 (2 HSPs)
chr3 (241-292)||(2563056-2563108)
chr3 (140-182)||(46303407-46303449)
[»] chr5 (2 HSPs)
chr5 (138-184)||(2243310-2243356)
chr5 (137-185)||(5205531-5205579)
[»] chr1 (1 HSPs)
chr1 (138-191)||(52432696-52432749)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 148 - 325
Target Start/End: Original strand, 45760457 - 45760634
Alignment:
Q  148 ttctttatcatcttcattcaacatgtgatctccatctaatttgtcccatactcaaatcctatttgaaattatgggtaaattaactttaattttatcaagg 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45760457 ttctttatcatcttcattcaacatgtgatctccatctaatttgtcccatactcaaatcctatttgacattatgggtaaattaactttaattttatcaagg 45760556  T
Q  248 ggtaatgtaagtctcaatgatagagttttttcttacaatcagttaccannnnnnnctcaagtacattaaaattcatca 325  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||       ||||| |||||||||||||||||    
T  45760557 ggtaatgtaagtctcaacgatagagttttttcttacaatcagttaccatttttatctcaaatacattaaaattcatca 45760634  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 25062354 - 25062445
Alignment:
Q  138 aacatcaaacttctttatcatcttcattcaacatgtgatctccatctaatttgtcccatactcaaatcctatttgaaattatgggtaaatta 229  Q
    ||||||||||||||| |||  ||||||| |||||||||||| |||||  ||||| ||||| |||||||||| |||  |||| ||||||||||    
T  25062354 aacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaatta 25062445  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 55897585 - 55897632
Alignment:
Q  137 aaacatcaaacttctttatcatcttcattcaacatgtgatctccatct 184  Q
    |||||||||||||||||||| | |||||||||||| |||||| |||||    
T  55897585 aaacatcaaacttctttatcttattcattcaacatatgatcttcatct 55897632  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 20512868 - 20512823
Alignment:
Q  137 aaacatcaaacttctttatcatcttcattcaacatgtgatctccat 182  Q
    |||||||||||||||| ||| |||||||| ||||||| ||||||||    
T  20512868 aaacatcaaacttcttcatcttcttcatttaacatgtaatctccat 20512823  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 28282685 - 28282776
Alignment:
Q  138 aacatcaaacttctttatcatcttcattcaacatgtgatctccatctaatttgtcccatactcaaatcctatttgaaattatgggtaaatta 229  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||| ||| || ||||| ||||||  || |||  |||| ||||||||||    
T  28282685 aacatcaaacttctttatctgcttcattcaatatgtgatctccatctcattcgttccataatcaaattttacttgttattaggggtaaatta 28282776  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 288
Target Start/End: Original strand, 16576283 - 16576431
Alignment:
Q  138 aacatcaaacttctttatcatcttcattcaacatgtgatctccatctaatttgtcccatactcaaatcctatttgaaattatgggtaaattaactttaat 237  Q
    ||||||||||||||| |||  |||||||||||||||||||||| ||| ||| || ||| | || |||| || ||   |||| ||||||||||||    |     
T  16576283 aacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaggggtaaattaac--ccaa 16576380  T
Q  238 tttatcaaggggtaatgtaagtctcaatgatagagttttttcttacaatca 288  Q
    || |||||||||||| ||| | | ||  |||||||||||||||||||||||    
T  16576381 ttcatcaaggggtaacgtaggccccacggatagagttttttcttacaatca 16576431  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 13712790 - 13712744
Alignment:
Q  138 aacatcaaacttctttatcatcttcattcaacatgtgatctccatct 184  Q
    ||||||||||||||||||| |||| ||||||||| | ||||||||||    
T  13712790 aacatcaaacttctttatcttctttattcaacatctaatctccatct 13712744  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 34891400 - 34891440
Alignment:
Q  138 aacatcaaacttctttatcatcttcattcaacatgtgatct 178  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  34891400 aacatcaaacttctttatcttcttcatttaacatgtgatct 34891440  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 34891568 - 34891612
Alignment:
Q  138 aacatcaaacttctttatcatcttcattcaacatgtgatctccat 182  Q
    ||||||||| ||||| |||  ||||||||||||||||||||||||    
T  34891568 aacatcaaatttcttcatctccttcattcaacatgtgatctccat 34891612  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 2563056 - 2563108
Alignment:
Q  241 atcaaggggtaatgtaagtctcaatgatagag-ttttttcttacaatcagtta 292  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||| ||||||    
T  2563056 atcaaggggtaatgtaggtctcattgatagagattttttcttacaagcagtta 2563108  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 46303407 - 46303449
Alignment:
Q  140 catcaaacttctttatcatcttcattcaacatgtgatctccat 182  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||    
T  46303407 catcaaacttcttcatcttctttattcaacatgtgatctccat 46303449  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 2243356 - 2243310
Alignment:
Q  138 aacatcaaacttctttatcatcttcattcaacatgtgatctccatct 184  Q
    ||||||||||||||| ||   ||||||||||||||||||||||||||    
T  2243356 aacatcaaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 5205579 - 5205531
Alignment:
Q  137 aaacatcaaacttctttatcatcttcattcaacatgtgatctccatcta 185  Q
    ||||||||||||| ||||||  ||| ||| |||||||||||||||||||    
T  5205579 aaacatcaaacttttttatctcctttattaaacatgtgatctccatcta 5205531  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 52432696 - 52432749
Alignment:
Q  138 aacatcaaacttctttatcatcttcattcaacatgtgatctccatctaatttgt 191  Q
    ||||| ||||||||| |||  ||||||| |||| ||||||||||||||||||||    
T  52432696 aacattaaacttcttcatctccttcatttaacaagtgatctccatctaatttgt 52432749  T

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