View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_48 (Length: 342)
Name: NF11180A_low_48
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_48 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 34958927 - 34959267
Alignment:
| Q |
6 |
gtttggtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagcaactcacattccaatatttcatatggttaaagtcattgattaagga |
105 |
Q |
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| T |
34958927 |
gtttcgtgttcgtgtatgagtttgtgtttcatagtattaccatattccaaaagcaacttacatttcaaaatttcatatggttaa-gtcattgattcagga |
34959025 |
T |
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| Q |
106 |
ttgtata-aaaaagttcatgccatattaacaagtgcgcctcatcaac----aatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctc |
200 |
Q |
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| T |
34959026 |
ttgtacacaaaaagtgcaggacatattaacaagtgcgcctcatcaacgtacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctc |
34959125 |
T |
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| Q |
201 |
atgtgcacattgaaactatattaatcatctctcaaagttcaaagaaattggcttccaaaaatgcttttcaaaatctggaaaacttgacctttttggcata |
300 |
Q |
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| T |
34959126 |
atgtgcacattgaaactatattaatcatctctcaaagttcttagaaattggcttcaaaaaatgcttttcaaaatctggaaaacttgacctttttggcata |
34959225 |
T |
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| Q |
301 |
tgatgcatgcattttattttaaagatatgattcatttgcatt |
342 |
Q |
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| T |
34959226 |
tgatgcatgcattttattttaaagatatgattcatttgcatt |
34959267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 342
Target Start/End: Complemental strand, 3921657 - 3921330
Alignment:
| Q |
6 |
gtttggtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagcaactcacattccaatatttcatatggttaaagtcattgattaagga |
105 |
Q |
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| T |
3921657 |
gtttcgtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagtaattcacattcggaaatttcatatggttaaagtcattgattgagga |
3921558 |
T |
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| Q |
106 |
ttgtata-aaaaagttcatgccatattaacaagtgcgcctcatcaacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgt |
204 |
Q |
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| T |
3921557 |
ttgtacacaaaaagtgtaggacatattaacaagt----------aacaatagtacatatttgttgtaactgtgaaacaagtctaagatccagcctcatgt |
3921468 |
T |
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| Q |
205 |
gcacattgaaactatattaatcatctctcaaagttcaaagaaattggcttccaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgat |
304 |
Q |
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| T |
3921467 |
gcacattgaacctatattaatcatctctcacagttcaaagaaattggtttcagaaaatgcttttcaaaatctggaaagcttgacctttttggcatatgat |
3921368 |
T |
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| Q |
305 |
gcatgcattttattttaaagatatgattcatttgcatt |
342 |
Q |
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| T |
3921367 |
gcatgcattttattttaaagatatgattcatctgcatt |
3921330 |
T |
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