View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_5 (Length: 539)
Name: NF11180A_low_5
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 15 - 534
Target Start/End: Complemental strand, 25382163 - 25381622
Alignment:
| Q |
15 |
tcttattcatcatcatcatcgtctctaaaacatagctcaacataccaccgccaccactagtt----gttcataacttggaaagattttgatcgagaacca |
110 |
Q |
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| T |
25382163 |
tcttattcatcatcatcatcgtctctaaaacatagctcaacataccaccgccaccactagttagttgttcataacttggaaagattttgatcgagaaccc |
25382064 |
T |
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| Q |
111 |
ttttgttactctggaaataaattttaattttagaatctggagttgttctttcaaaaatagaatctggatctgttaaaatttgttttcacaaa-------- |
202 |
Q |
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| T |
25382063 |
ttttgttactctggaaataaattttaattttagaatctggagttgttctttcaaaaatagaatctggatctgttaaaatttgttttcacaaatataagca |
25381964 |
T |
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| Q |
203 |
----------caaatttgcttatattggagaaatttacttagaatctggatttgttaattaatattttagaatctggacctcttatcagagaaatttgct |
292 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25381963 |
aatttgtaaacaaatttgcttatattggagaaatttgcttagaatctggatttgttaattaatattttagaatctggacctcttatcagagaaatttgct |
25381864 |
T |
|
| Q |
293 |
tatcgaataagaggtccaacagtctcactacaaaaccagtagaacacaaatagcccgagtttattacaaatatatggaatggagactgtatcaaatttta |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25381863 |
tatcgaataagaggtccaacagtctcactacaaaaccagtagaacacaaatagcccgagtttattacaaatatatggaatggagactgtatcaaatttta |
25381764 |
T |
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| Q |
393 |
agaaaacatatgaaacatcgtatacctggacttcgaaatcagaaagtattactgatttcaactatnnnnnnnnnnctaatatcacattagctttaattta |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25381763 |
agaaaacatatgaaacatcgtatacctggacttcgaaatcagaaagtattactgatttcaactataaaaaaaaaactaatatcacattagctttaattta |
25381664 |
T |
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| Q |
493 |
aacagaaagtattcattctttttcactaaataacactttgat |
534 |
Q |
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| T |
25381663 |
atcagaaagtattcattctttttcactaaataacactttgat |
25381622 |
T |
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