View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_59 (Length: 327)
Name: NF11180A_low_59
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 45759321 - 45759017
Alignment:
| Q |
1 |
aacgacacactacttattagttattagataggtgtgtgccgagagcttgtcgggtatgaaaacaatcttacaatggtttgaattaatttttggtctaaag |
100 |
Q |
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| T |
45759321 |
aacgacacactacttattagttattagataggtgtgtgccgagagcttgtcgggtatgaaaacaatcttacgatggtttgaattaatttttggtttaaag |
45759222 |
T |
|
| Q |
101 |
gttaattttttcaagagtaagctctccaatgttaatgttaactcatcaaatttcatcgatacatcaacatgattccttaagtgaaaaatggataaaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
45759221 |
gttaattttttcaagagtaagctctccaatgttaatgttaactcatcaaatttcatcgatacatcaacctgatttcttaagtgaaaaatggataaaatcc |
45759122 |
T |
|
| Q |
201 |
cctttatttacctcgatttgtcagtgggagccaatctgaggaggctccgaatgtggaaattagttgttgaagttttgaagaaaacatcgggtagttggag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45759121 |
cctttatttacctcgatttgtcagtgggagccaatctgaggaggctccgaatgtggaaattagttgttgaagttttggagaaaacatcgggtagttggag |
45759022 |
T |
|
| Q |
301 |
gaata |
305 |
Q |
| |
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||||| |
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| T |
45759021 |
gaata |
45759017 |
T |
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