View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_64 (Length: 320)
Name: NF11180A_low_64
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 24 - 314
Target Start/End: Complemental strand, 3702907 - 3702617
Alignment:
| Q |
24 |
aacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaacacgacaaataacacaaagttcttaatcttataagtttaaagn |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
3702907 |
aacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaaga |
3702808 |
T |
|
| Q |
124 |
nnnnnngtgcctgctaaaccatgacgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccattt |
223 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702807 |
aaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccattt |
3702708 |
T |
|
| Q |
224 |
catcatccacaatatcaaccataagttcaggatccattttctcgcctttcatctcacaaatgttatgcaaaacacaacaagcacaaagttc |
314 |
Q |
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| T |
3702707 |
catcatcaacaatatcaaccataagttcaggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcacaaagttc |
3702617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 27 - 312
Target Start/End: Complemental strand, 3699216 - 3698931
Alignment:
| Q |
27 |
aaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaacacgacaaataacacaaagttcttaatcttataagtttaaagnnnn |
126 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||| ||||||||| |
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| T |
3699216 |
aaacagcaaaaaagaaaatcatgttctcagagatgcataaaacaatgatcaaaatacaacaaattacacaaagttcttaatcttatgagtttaaagaaaa |
3699117 |
T |
|
| Q |
127 |
nnngtgcctgctaaaccatgacgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcat |
226 |
Q |
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| T |
3699116 |
gaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcat |
3699017 |
T |
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| Q |
227 |
catccacaatatcaaccataagttcaggatccattttctcgcctttcatctcacaaatgttatgcaaaacacaacaagcacaaagt |
312 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3699016 |
catcaacaatatcaaccataagttcaggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagt |
3698931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 39718924 - 39718869
Alignment:
| Q |
211 |
tcaggaaccatttcatcatccacaatatcaaccataagttcaggatccattttctc |
266 |
Q |
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| T |
39718924 |
tcaggaagcatttcatcatccaaaacatcaatcttaagttcaggatccattttctc |
39718869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 52262407 - 52262442
Alignment:
| Q |
272 |
tcatctcacaaatgttatgcaaaacacaacaagcac |
307 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
52262407 |
tcatctcacaaatattatgcaaaacacaacaagcac |
52262442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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