View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11180A_low_69 (Length: 306)

Name: NF11180A_low_69
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11180A_low_69
NF11180A_low_69
[»] chr1 (1 HSPs)
chr1 (6-306)||(2747009-2747303)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 2747009 - 2747303
Alignment:
Q  6 gtttggagttagggtcgggtgagtctggtaatatggaacggaatgannnnnnnnnnnnnnnnnnngtttggtctgtgaaatgttggattggtaactcttg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||    
T  2747009 gtttggagttagggtcgggtgagtctggtaatatggaacggaatgagttgttattattgttgttggtttggtctgtgaaatgttggattggtaactcttg 2747108  T
Q  106 tgaaagatgttggttttggtaagccataaaacttaacaaaagaaacaaaacaagtg----tgtctgtgtgttagagaacaaggtactaggtagctattat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||| |||||||||||||||||||    
T  2747109 tgaaagatgttggttttggtaagccataaaacttaacaaaagaaacaaaacaagtgtgtatgtttgtgtgttagagaacagggtactaggtagctattat 2747208  T
Q  202 agtgttgaattgaaggatgtttcagagatatgaagaagtgaagttgcaaaagagagaaagtgtgtttttg---tgttgttagtttggtttgggtgaagta 298  Q
    ||||     ||||||||||||| |||||||        ||||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||||    
T  2747209 agtg-----ttgaaggatgtttgagagata--------tgaagttgcaaaagagagaaagtgtgtttttgtgttgttgttggtttggtttgggtgaagta 2747295  T

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