View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11180A_low_7 (Length: 459)
Name: NF11180A_low_7
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11180A_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 459
Target Start/End: Original strand, 17261104 - 17261549
Alignment:
| Q |
9 |
aatgcttggccatttataatttcgtaaattactattaacatctccatttaaaataatacacacttgagaccttgggtgtttctttttggagattaaaaag |
108 |
Q |
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| T |
17261104 |
aatgcttggccatttataattccgtaaattacaatcaacatctccatttaagttaatatacacttgagaccttgggtgtttctttttggagattaaaaag |
17261203 |
T |
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| Q |
109 |
tatccaaaagtttattttcaaaataattaataatgtcttttgtttagtaaaaacaaatccttctgattttgtcaaaacataaactagactttgatgtaat |
208 |
Q |
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| T |
17261204 |
tatccaaaagtttattttcaaaataattaataatgtcttttgtttagtaaaaacaaaaccttctgattttgtcaaaacataaactagactttgatgtaat |
17261303 |
T |
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| Q |
209 |
gaaatgctctagtgtctaatcaatgttttggacattatgcatcttagtttgcataataggctttatattacaattaatgttactattgctagctcttaga |
308 |
Q |
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| T |
17261304 |
gaaatgctctagtgtctaatcaatgttttggacattatgcatcttagtttgcatcataggctttatattac----aatgttactattgctagctcttaga |
17261399 |
T |
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| Q |
309 |
tatttggcacatataagatcgtgaaagatgtggttattataacccataccaattcaaacaataaaagatattgctacaccatatcgaccgcatttattac |
408 |
Q |
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| T |
17261400 |
tatttggcacatataagatcgtgaaagatgtggttattataacccataccaattcaaacaataaaagatattgctacaccatatcgaccgcatttattac |
17261499 |
T |
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| Q |
409 |
cggctgaaaatacaggctaacaacatcgtcgtctcagtgcgtcgttgtgat |
459 |
Q |
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| T |
17261500 |
ctgttgaaaatacagcct-acaacatcgtcgtctcggtgcgtcgttgtgat |
17261549 |
T |
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