View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11180A_low_71 (Length: 299)

Name: NF11180A_low_71
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11180A_low_71
NF11180A_low_71
[»] chr3 (1 HSPs)
chr3 (1-293)||(52642962-52643255)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 52643255 - 52642962
Alignment:
Q  1 tcaaagagaataaaggatatcccaactcccaactaggtagacgccccactataatcatttctcaaatgctcgtatatattagtaataagaggg-gggata 99  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||    
T  52643255 tcaaagagaataaaggatgtcccaactcccaactaggtagacgccccactataatcatttctcaaatgctcgtatatattattgataagagggagggata 52643156  T
Q  100 caaaaataaaaatttagagggacataaaacctaactcgataaattcacaccaaagtgtaggtcagttcaaacgagcattacgaacattttaaaccattca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  52643155 caaaaataaaaatttagagggacataaaacctaactcgataaattcacaccaaagtgtaggtcagttcaaacgagcattacaaacattgtaaaccattca 52643056  T
Q  200 gggggctctagcttctaattcatcttaagtcttaacaagcacttatcagatagaggtattcaggctagtgtatggactgatcgtcaacacgaaa 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52643055 gggggctctagcttctaattcatcttaagtcttaacaagcacttatcagatagaggtattcaggctagtgtatggactgatcgtcaacacgaaa 52642962  T

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