View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11180A_low_77 (Length: 294)

Name: NF11180A_low_77
Description: NF11180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11180A_low_77
NF11180A_low_77
[»] chr4 (1 HSPs)
chr4 (13-294)||(33102490-33102771)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 33102771 - 33102490
Alignment:
Q  13 gttggcgcagggttctcttcgaagtttgacggtcttggagtcggcccacgggaattggactgaacggaatacacatcattagcaccaaaattagaatgtc 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33102771 gttggcacagggttctcttcgaagtttgacggtcttggagtcggcccacgggaattggactgaacggaatacacatcattagcaccaaaattagaatgtc 33102672  T
Q  113 tcggagcatagcccatcatagagtagaaatccgtatgattaaaattagaccctcgcggcgtcggattccgggaagaactcaaactataaatctctgctcc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33102671 tcggagcatagcccatcatagagtagaaatccgtatgattaaaattagaccctcgcggcgtcggattccgggaagaactcaaactataaatctctgctcc 33102572  T
Q  213 ggtgagattcgacggccgcggagtcatcataaaagatctccgggaagcgtttgattttctgacatgaacatgaagcttacca 294  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33102571 ggtgagattcgacggccgtggagtcatcataaaagatctccgggaagcgtttgattttctgacatgaacatgaagcttacca 33102490  T

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